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Ydjc Gene Detail
Summary
  • Symbol
    Ydjc
  • Name
    YdjC homolog (bacterial)
  • Synonyms
    1810015A11Rik, 4930521M19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916351
    NCBI Gene: 69101
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:17146950-17148857 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 10.63 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916351
protein coding gene Chr16:17144621-17160701 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022572
protein coding gene Chr16:14269437-14285526 (+)
A/J MGP_AJ_G0022533
protein coding gene Chr16:13559559-13576744 (+)
AKR/J MGP_AKRJ_G0022510
protein coding gene Chr16:14108437-14124888 (+)
BALB/cJ MGP_BALBcJ_G0022536
protein coding gene Chr16:13709265-13725413 (+)
C3H/HeJ MGP_C3HHeJ_G0022303
protein coding gene Chr16:14231397-14249522 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022987
protein coding gene Chr16:14485167-14503960 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020507
protein coding gene Chr16:13644284-13660302 (+)
CAST/EiJ MGP_CASTEiJ_G0021831
protein coding gene Chr16:14143843-14162966 (+)
CBA/J MGP_CBAJ_G0022274
protein coding gene Chr16:15154865-15171390 (+)
DBA/2J MGP_DBA2J_G0022404
protein coding gene Chr16:13492271-13508315 (+)
FVB/NJ MGP_FVBNJ_G0022380
protein coding gene Chr16:13527059-13543356 (+)
LP/J MGP_LPJ_G0022471
protein coding gene Chr16:14039727-14055829 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022401
protein coding gene Chr16:14854480-14871972 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022998
protein coding gene Chr16:14029355-14045447 (+)
PWK/PhJ MGP_PWKPhJ_G0021574
protein coding gene Chr16:13735069-13751026 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021402
protein coding gene Chr16:14032260-14044492 (+)
WSB/EiJ MGP_WSBEiJ_G0021878
protein coding gene Chr16:14035578-14053702 (+)



Homology
more
  • Human Ortholog
    YDJC, YdjC chitooligosaccharide deacetylase homolog
  • Vertebrate Orthologs
    9
  • Human Ortholog
    YDJC, YdjC chitooligosaccharide deacetylase homolog
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 150223
    neXtProt AC: NX_A8MPS7
    UniProt: A8MPS7

  • Chr Location
    22q11.21; chr22:21628089-21630326 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 19062
    1 human;1 mouse;1 rat;1 chimpanzee;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: YDJC
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from 2 alleles in 2 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69101 NCBI Gene Model | MGI Sequence Detail 1908 C57BL/6J ±  kb
    transcript NM_026940 RefSeq | MGI Sequence Detail 1320 C57BL/6  
    polypeptide Q14BV6 UniProt | EBI | MGI Sequence Detail 310 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 31
      Genomic 2
      cDNA 29

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1918909
    References
    more
    • Summaries
      All 36
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 9
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory