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Snapc3
Gene Detail
 Symbol
Name
ID
Snapc3
small nuclear RNA activating complex, polypeptide 3
MGI:1916338
Synonyms 1810020H02Rik, 4930558A07Rik, 5031401C21Rik, E030018J20Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
39.46 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:83417724-83467676 bp, + strand
From VEGA annotation of GRCm38

  49953 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31130  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Gene Tree: Snapc3

Human
homologs
Human Homolog SNAPC3, small nuclear RNA activating complex, polypeptide 3, 50kDa
NCBI Gene ID 6619
neXtProt AC  NX_Q92966
Human Synonyms  PTFbeta, SNAP50
Human Chr (Location)  9p22.3; chr9:15422696-15462596 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(63) : Gene trapped(62) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snapc3 interacts with 310 markers (Mir1b, Mir7-1, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleolus, nucleus
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (117)    Tissues (30)    Images (22)
Theiler Stages: 22, 23
Assay TypeResults
RNA in situ 114
RT-PCR 3
cDNA source data(21)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(22) cDNA(21) Primer pair(1)
Microarray probesets(10)
Other database
links
VEGA Gene ModelOTTMUSG00000000033 (Evidence)
Ensembl Gene ModelENSMUSG00000028483 (Evidence)
Entrez Gene77634 (Evidence)
NIA Mouse Gene IndexU004446
Consensus CDS ProjectCCDS38792.1
International Mouse Knockout Project StatusSnapc3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000033 VEGA Gene Model | MGI Sequence Detail 49953 C57BL/6J ±  kb
transcript OTTMUST00000000099 VEGA | MGI Sequence Detail 2710 Not Applicable 
polypeptide OTTMUSP00000047133 VEGA | MGI Sequence Detail 407 Not Applicable 

For the selected sequences
All sequences(70) RefSeq(12) UniProt(3)
Polymorphisms SNPs within 2kb(245 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022042 snRNA-activating protein complex, subunit 3
Protein Ontology PR:000015318 snRNA-activating protein complex subunit 3
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:1914912, MGI:1924884, MGI:2140255, MGI:2442899

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory