About   Help   FAQ
Zcchc9 Gene Detail
Summary
  • Symbol
    Zcchc9
  • Name
    zinc finger, CCHC domain containing 9
  • Synonyms
    1810019C21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916335
    NCBI Gene: 69085
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:91796533-91807705 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 47.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    143 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916335
protein coding gene Chr13:91796519-91807997 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020809
protein coding gene Chr13:93095936-93106047 (-)
A/J MGP_AJ_G0020763
protein coding gene Chr13:89647890-89659433 (-)
AKR/J MGP_AKRJ_G0020736
protein coding gene Chr13:92367667-92376851 (-)
BALB/cJ MGP_BALBcJ_G0020759
protein coding gene Chr13:90290718-90299969 (-)
C3H/HeJ MGP_C3HHeJ_G0020553
protein coding gene Chr13:92068460-92078224 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021196
protein coding gene Chr13:95950380-95959633 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018764
protein coding gene Chr13:85600631-85609656 (-)
CAST/EiJ MGP_CASTEiJ_G0020072
protein coding gene Chr13:91332959-91342036 (-)
CBA/J MGP_CBAJ_G0020512
protein coding gene Chr13:99744495-99755386 (-)
DBA/2J MGP_DBA2J_G0020637
protein coding gene Chr13:89406709-89417650 (-)
FVB/NJ MGP_FVBNJ_G0020617
protein coding gene Chr13:88224450-88233942 (-)
LP/J MGP_LPJ_G0020710
protein coding gene Chr13:93210874-93222240 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020646
protein coding gene Chr13:100256357-100267839 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021236
protein coding gene Chr13:91772520-91781841 (-)
PWK/PhJ MGP_PWKPhJ_G0019824
protein coding gene Chr13:88159679-88168848 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019648
protein coding gene Chr13:88039089-88053071 (-)
WSB/EiJ MGP_WSBEiJ_G0020129
protein coding gene Chr13:92254167-92265074 (-)



Homology
more
  • Human Ortholog
    ZCCHC9, zinc finger CCHC-type containing 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZCCHC9, zinc finger CCHC-type containing 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PPP1R41
  • Links
    NCBI Gene ID: 84240
    neXtProt AC: NX_Q8N567
    UniProt: Q8N567

  • Chr Location
    5q14.1; chr5:81301583-81313147 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12999
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZCCHC9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021621 Ensembl Gene Model | MGI Sequence Detail 11173 C57BL/6J ±  kb
transcript ENSMUST00000022121 Ensembl | MGI Sequence Detail 1541 Not Applicable  
polypeptide ENSMUSP00000022121 Ensembl | MGI Sequence Detail 271 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 10
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/15/2019
MGI 6.14
The Jackson Laboratory