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Trappc2l Gene Detail
Summary
  • Symbol
    Trappc2l
  • Name
    trafficking protein particle complex 2-like
  • Synonyms
    1810017G16Rik, Tca17
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916295
    NCBI Gene: 59005
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:122611626-122615591 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 71.92 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    122 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916295
protein coding gene Chr8:122611626-122616660 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034234
protein coding gene Chr8:126172290-126178452 (+)
A/J MGP_AJ_G0034214
protein coding gene Chr8:120941602-120945572 (+)
AKR/J MGP_AKRJ_G0034141
protein coding gene Chr8:124468233-124472203 (+)
BALB/cJ MGP_BALBcJ_G0034208
protein coding gene Chr8:121141138-121145958 (+)
C3H/HeJ MGP_C3HHeJ_G0033918
protein coding gene Chr8:125169754-125174733 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034727
protein coding gene Chr8:130379791-130383753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031669
protein coding gene Chr8:113773308-113777310 (+)
CAST/EiJ MGP_CASTEiJ_G0033246
protein coding gene Chr8:125248501-125254656 (+)
CBA/J MGP_CBAJ_G0033891
protein coding gene Chr8:135168466-135172428 (+)
DBA/2J MGP_DBA2J_G0034048
protein coding gene Chr8:120130306-120134254 (+)
FVB/NJ MGP_FVBNJ_G0033991
protein coding gene Chr8:119276783-119280925 (+)
LP/J MGP_LPJ_G0034137
protein coding gene Chr8:126296648-126302242 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034038
protein coding gene Chr8:137332167-137337948 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034746
protein coding gene Chr8:124650294-124654256 (+)
PWK/PhJ MGP_PWKPhJ_G0032947
protein coding gene Chr8:119953422-119957596 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032787
protein coding gene Chr8:123378885-123384086 (+)
WSB/EiJ MGP_WSBEiJ_G0033362
protein coding gene Chr8:125405203-125410604 (+)



Homology
more
  • Human Ortholog
    TRAPPC2L, trafficking protein particle complex 2 like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRAPPC2L, trafficking protein particle complex 2 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSPC176, PERRB
  • Links
    NCBI Gene ID: 51693
    neXtProt AC: NX_Q9UL33
    UniProt: Q9UL33

  • Chr Location
    16q24.3; chr16:88856220-88862686 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 59005 NCBI Gene Model | MGI Sequence Detail 3966 C57BL/6J ±  kb
transcript NM_021502 RefSeq | MGI Sequence Detail 634 C57BL/6  
polypeptide Q9JME7 UniProt | EBI | MGI Sequence Detail 139 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000016613 trafficking protein particle complex subunit 2-like protein
  • InterPro Domains
    IPR011012 Longin-like domain superfamily
    IPR006722 Trafficking protein particle complex subunit 2
Molecular
Reagents
less
  • All nucleic 73
    cDNA 73

    Microarray probesets 3
Other
Accession IDs
less
MGI:1927554
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:64911 Inoue S, et al., Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Biochem Biophys Res Commun. 2000 Feb 16;268(2):553-61
  • Latest
    J:130260 Van Dyck F, et al., Loss of the PlagL2 transcription factor affects lacteal uptake of chylomicrons. Cell Metab. 2007 Nov;6(5):406-13

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory