1810006J02Rik Gene Detail

Summary

• Symbol
  1810006J02Rik
• Name
  RIKEN cDNA 1810006J02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916280
  NCBI Gene: 69030
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:98059192-98072380 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916280	lncRNA gene	Chr1:98059140-98073990 (+)
129S1/SvImJ	ENSMUSG00200000285	lncRNA gene	Chr1:95237879-95252702 (+)
A/J	ENSMUSG00195000553	lncRNA gene	Chr1:94770127-94784957 (+)
AKR/J	ENSMUSG00220000241	lncRNA gene	Chr1:95074047-95088882 (+)
BALB/cJ	ENSMUSG00180005924	lncRNA gene	Chr1:95077822-95092646 (+)
C3H/HeJ	ENSMUSG00175005651	lncRNA gene	Chr1:94977852-94992685 (+)
C57BL/6NJ	ENSMUSG00215000399	lncRNA gene	Chr1:94966143-94980979 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004463	lincRNA gene	Chr1:90674508-90687004 (+)
CAST/EiJ	ENSTCUG00005000145	lncRNA gene	Chr1:94546625-94561378 (+)
CBA/J	ENSMUSG00210000191	lncRNA gene	Chr1:94827844-94842673 (+)
DBA/2J	ENSMUSG00185014471	lncRNA gene	Chr1:99295190-99310009 (+)
FVB/NJ	ENSMUSG00205000884	lncRNA gene	Chr1:94172670-94187510 (+)
JF1/MsJ	ENSUMUG00000025445	lncRNA gene	Chr1:98045337-98060113 (+)
LP/J	ENSMUSG00230024393	lncRNA gene	Chr1:98558717-98573538 (+)
NOD/ShiLtJ	ENSMUSG00190000567	lncRNA gene	Chr1:94884220-94899047 (+)
NZO/HlLtJ	ENSMUSG00225000429	lncRNA gene	Chr1:102470532-102485360 (+)
PWK/PhJ	ENSLUMG00010006657	lncRNA gene	Chr1:94437992-94452821 (+)
SPRET/EiJ	ENSMSPG00010000922	lncRNA gene	Chr1:96562166-96576522 (+)
WSB/EiJ	ENSIUOG00005000285	lncRNA gene	Chr1:94561332-94576169 (+)

Homology

• Gene Tree
  1810006J02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1810006J02Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000100182 (Evidence)
• NCBI Gene
  69030

Representative Sequences			Length	Strain/Species
genomic	69030	NCBI Gene Model | MGI Sequence Detail	13189	C57BL/6J
transcript	NR_040439	RefSeq | MGI Sequence Detail	1687	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1810006J02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8234	Chr1:98059169-98059183 (+)	-16 bp
Tssr8235	Chr1:98059195-98059224 (+)	18 bp