About   Help   FAQ
Snx15
Gene Detail
Symbol

Name
ID
Snx15
sorting nexin 15
MGI:1916274
Synonyms
1500032B08Rik, E130013C21Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 19
4.34 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr19:6119399-6128304 bp, - strand
From VEGA annotation of GRCm38

  8906 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12294  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SNX15
Gene Tree: Snx15

Human
homologs
SNX15, sorting nexin 15
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 29907
neXtProt AC: NX_Q9NRS6

Human Synonyms: HSAF001435

Human Chr (Location): 11q12; chr11:65027408-65040572 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(12) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snx15 interacts with 73 markers (Mir26a-1, Mir26a-2, Mir26b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process protein transport, transport
Component cytoplasm, cytoplasmic vesicle, ...
Function lipid binding, phosphatidylinositol binding
External Resources: FuncBase
Expression
cDNA source data(39)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase snx15 ; ZFIN snx15    NEW 
Molecular
reagents
All nucleic(42) cDNA(42)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000034056 (Evidence)
Ensembl Gene Model ENSMUSG00000024787 (Evidence)
Entrez Gene 69024 (Evidence)
UniGene 329629
DFCI TC1577870
DoTS DT.531039
NIA Mouse Gene Index U019018
Consensus CDS Project CCDS29495.1
International Mouse Phenotyping Consortium Status Snx15
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034056 VEGA Gene Model | MGI Sequence Detail 8906 C57BL/6J ±  kb
transcript OTTMUST00000086014 VEGA | MGI Sequence Detail 1635 Not Applicable 
polypeptide OTTMUSP00000046522 VEGA | MGI Sequence Detail 337 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(16) UniProt(4)
Polymorphisms
SNPs within 2kb(10 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007330 MIT
InterPro IPR001683 Phox homologous domain
Protein Ontology PR:000015364 sorting nexin-15
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(29)
Other
accession IDs
MGI:2442017

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/30/2015
MGI 5.22
The Jackson Laboratory