1500015L24Rik Gene Detail

Summary

• Symbol
  1500015L24Rik
• Name
  RIKEN cDNA 1500015L24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916244
  NCBI Gene: 68994
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:20382652-20400149 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  754 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916244	lncRNA gene	Chr19:20302210-20423185 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005817	lincRNA gene	Chr19:18393165-18410694 (+)
A/J	MGP_AJ_G0005808	lincRNA gene	Chr19:17399934-17417452 (+)
AKR/J	MGP_AKRJ_G0005784	lincRNA gene	Chr19:18040278-18057795 (+)
BALB/cJ	MGP_BALBcJ_G0005787	lincRNA gene	Chr19:17400033-17417552 (+)
C3H/HeJ	MGP_C3HHeJ_G0005735	lincRNA gene	Chr19:18016994-18034521 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005947	lincRNA gene	Chr19:19038721-19056208 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005288	lincRNA gene	Chr19:17703124-17722117 (+)
CAST/EiJ	MGP_CASTEiJ_G0005673	lincRNA gene	Chr19:17663393-17680847 (+)
CBA/J	MGP_CBAJ_G0005720	lincRNA gene	Chr19:19788093-19805611 (+)
DBA/2J	MGP_DBA2J_G0005740	lincRNA gene	Chr19:17403969-17421956 (+)
FVB/NJ	MGP_FVBNJ_G0005767	lincRNA gene	Chr19:17272447-17289966 (+)
LP/J	MGP_LPJ_G0005821	lincRNA gene	Chr19:18358150-18375679 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005753	lincRNA gene	Chr19:19920391-19938587 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005945	lincRNA gene	Chr19:18011916-18029398 (+)
PWK/PhJ	MGP_PWKPhJ_G0005620	lincRNA gene	Chr19:16943187-16961004 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005535	lincRNA gene	Chr19:17290872-17312819 (+)
WSB/EiJ	MGP_WSBEiJ_G0005727	lincRNA gene	Chr19:18063392-18082358 (+)

Homology

• Gene Tree
  1500015L24Rik
  

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094732 (Evidence)
• NCBI Gene
  68994

Representative Sequences			Length	Strain/Species
genomic	68994	NCBI Gene Model | MGI Sequence Detail	17498	C57BL/6J
transcript	NR_045817	RefSeq | MGI Sequence Detail	778	ZRU/MplStud
polypeptide	Q8CF53	UniProt | EBI | MGI Sequence Detail	90	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1500015L24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155469	Chr19:20382615-20382625 (+)	-32 bp
Tssr155470	Chr19:20382644-20382655 (+)	-2 bp