About   Help   FAQ
Dcaf12 Gene Detail
Summary
  • Symbol
    Dcaf12
  • Name
    DDB1 and CUL4 associated factor 12
  • Synonyms
    1500001L20Rik, 5830424K06Rik, Wdr40a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916220
    NCBI Gene: 68970
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:41291300-41314889 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 21.32 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916220
protein coding gene Chr4:41291300-41316731 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028158
protein coding gene Chr4:39227338-39252431 (-)
A/J MGP_AJ_G0028116
protein coding gene Chr4:37738722-37762254 (-)
AKR/J MGP_AKRJ_G0028079
protein coding gene Chr4:38710306-38733912 (-)
BALB/cJ MGP_BALBcJ_G0028128
protein coding gene Chr4:38070814-38094380 (-)
C3H/HeJ MGP_C3HHeJ_G0027856
protein coding gene Chr4:39256560-39280115 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028569
protein coding gene Chr4:40682276-40705959 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025910
protein coding gene Chr4:35389791-35412817 (-)
CAST/EiJ MGP_CASTEiJ_G0027312
protein coding gene Chr4:38931591-38955205 (-)
CBA/J MGP_CBAJ_G0027828
protein coding gene Chr4:42073114-42096681 (-)
DBA/2J MGP_DBA2J_G0027972
protein coding gene Chr4:37659731-37683331 (-)
FVB/NJ MGP_FVBNJ_G0027939
protein coding gene Chr4:36992142-37015757 (-)
LP/J MGP_LPJ_G0028080
protein coding gene Chr4:39293124-39319597 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027972
protein coding gene Chr4:45379675-45404919 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028628
protein coding gene Chr4:38831493-38856691 (-)
PWK/PhJ MGP_PWKPhJ_G0027031
protein coding gene Chr4:37675530-37700183 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026858
protein coding gene Chr4:38552811-38579436 (-)
WSB/EiJ MGP_WSBEiJ_G0027388
protein coding gene Chr4:38806623-38832004 (-)



Homology
more
  • Human Ortholog
    DCAF12, DDB1 and CUL4 associated factor 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    DCAF12, DDB1 and CUL4 associated factor 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CT102, KIAA1892, TCC52, WDR40A
  • Links
    NCBI Gene ID: 25853
    neXtProt AC: NX_Q5T6F0
    UniProt: Q5T6F0

  • Chr Location
    9p13.3; chr9:34086383-34126773 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 49418
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: DCAF12
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028436 Ensembl Gene Model | MGI Sequence Detail 23590 C57BL/6J ±  kb
transcript ENSMUST00000030145 Ensembl | MGI Sequence Detail 3442 Not Applicable  
polypeptide ENSMUSP00000030145 Ensembl | MGI Sequence Detail 453 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 161
    cDNA 161

    Microarray probesets 8
Other
Accession IDs
less
MGI:1923288, MGI:2140155, MGI:2140386
References
more
  • Summaries
    All 33
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/13/2019
MGI 6.13
The Jackson Laboratory