About   Help   FAQ
Cdan1
Gene Detail
Symbol

Name
ID
Cdan1
congenital dyserythropoietic anemia, type I (human)
MGI:1916218
Synonyms
1500015A01Rik, CDA1, CDA-I, codanin-1
Feature Type
protein coding gene
Genetic Map
Chromosome 2
60.37 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:120716522-120850128 bp, - strand
From VEGA annotation of GRCm38

  133607 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16324  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Cdan1

Human
homologs
Human Homolog CDAN1, codanin 1
NCBI Gene ID 146059
neXtProt AC  NX_Q8IWY9
Human Synonyms  CDA1, CDAI, CDAN1A, DLT, PRO1295
Human Chr (Location)  15q15.2; chr15:42723562-42737219 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CDAN1
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(2) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a gene trapped allele exhibit complete embryonic lethality between implantation and somite formation.
 
Interactions
Cdan1 interacts with 300 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process chromatin assembly, chromatin organization, ...
Component cytoplasm, endomembrane system, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (44)    Tissues (5)    Images (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 44
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000015621 (Evidence)
Ensembl Gene ModelENSMUSG00000027284 (Evidence)
Entrez Gene68968 (Evidence)
DoTSDT.40155562, DT.101176682, DT.530505
Consensus CDS ProjectCCDS38212.1
International Mouse Knockout Project StatusCdan1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015621 VEGA Gene Model | MGI Sequence Detail 133607 C57BL/6J ±  kb
transcript OTTMUST00000037112 VEGA | MGI Sequence Detail 5996 Not Applicable 
polypeptide OTTMUSP00000016637 VEGA | MGI Sequence Detail 1232 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(2)
Polymorphisms
SNPs within 2kb(664 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000005182 codanin-1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:174639 Renella R, et al., Codanin-1 mutations in congenital dyserythropoietic anemia type 1 affect HP1{alpha} localization in erythroblasts. Blood. 2011 Jun 23;117(25):6928-38
All references(35)
Other
accession IDs
MGI:2138950, MGI:2139352

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/11/2014
MGI 5.20
The Jackson Laboratory