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Zfas1 Gene Detail
Summary
  • Symbol
    Zfas1
  • Name
    zinc finger, NFX1-type containing 1, antisense RNA 1
  • Synonyms
    1500012F01Rik, Zfos1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1916199
    NCBI Gene: 68949
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:167063103-167065862 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 87.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916199
lncRNA gene Chr2:167062934-167065862 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026908
protein coding gene Chr2:172762489-172765211 (+)
A/J MGP_AJ_G0026875
protein coding gene Chr2:165666915-165669843 (+)
AKR/J MGP_AKRJ_G0026846
protein coding gene Chr2:170597885-170600747 (+)
BALB/cJ MGP_BALBcJ_G0026884
protein coding gene Chr2:166015839-166019016 (+)
C3H/HeJ MGP_C3HHeJ_G0026626
protein coding gene Chr2:170966071-170970195 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027331
protein coding gene Chr2:177780901-177785879 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024702
protein coding gene Chr2:158994733-158997752 (+)
CAST/EiJ MGP_CASTEiJ_G0026084
protein coding gene Chr2:171424638-171427361 (+)
CBA/J MGP_CBAJ_G0026603
protein coding gene Chr2:184303199-184307893 (+)
DBA/2J MGP_DBA2J_G0026741
protein coding gene Chr2:164787822-164790987 (+)
FVB/NJ MGP_FVBNJ_G0026707
protein coding gene Chr2:163293498-163296552 (+)
LP/J MGP_LPJ_G0026842
protein coding gene Chr2:172786325-172789047 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026726
protein coding gene Chr2:187706094-187709816 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027388
protein coding gene Chr2:170506557-170509485 (+)
PWK/PhJ MGP_PWKPhJ_G0025821
protein coding gene Chr2:164440768-164443488 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025622
protein coding gene Chr2:169455227-169457925 (+)
WSB/EiJ MGP_WSBEiJ_G0026157
protein coding gene Chr2:171408616-171411338 (+)



Homology
more
  • Human Ortholog
    ZFAS1, ZNFX1 antisense RNA 1
  • Human Ortholog
    ZFAS1, ZNFX1 antisense RNA 1
    Orthology source: HGNC
  • Synonyms
    C20orf199, HSUP1, HSUP2, NCRNA00275, ZNFX1-AS1
  • Links
    NCBI Gene ID: 441951

  • Chr Location
    20q13.13; chr20:49278178-49289260 (+)  GRCh38.p7

  • HCOP
    human homology predictions: ZFAS1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68949 NCBI Gene Model | MGI Sequence Detail 2760 C57BL/6J ±  kb
transcript NR_138563 RefSeq | MGI Sequence Detail 754 C57BL/6  
polypeptide Q3V494 UniProt | EBI | MGI Sequence Detail 79 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 39
    cDNA 39

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:230787 Askarian-Amiri ME, et al., SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. RNA. 2011 May;17(5):878-91

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory