Rnf122 Gene Detail

Summary

• Symbol
  Rnf122
• Name
  ring finger protein 122
• Synonyms
  1110063C11Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1916117
  NCBI Gene: 68867
• Gene Overview
  MyGene.info: RNF122
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr8:31111820-31131482 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 17.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  356 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916117	protein coding gene	Chr8:31111670-31132071 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0033513	protein coding gene	Chr8:29492301-29513006 (+)
A/J	MGP_AJ_G0033493	protein coding gene	Chr8:28335943-28355960 (+)
AKR/J	MGP_AKRJ_G0033417	protein coding gene	Chr8:29264154-29284127 (+)
BALB/cJ	MGP_BALBcJ_G0033489	protein coding gene	Chr8:28482998-28505459 (+)
C3H/HeJ	MGP_C3HHeJ_G0033203	protein coding gene	Chr8:29561428-29583249 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034005	protein coding gene	Chr8:30568502-30589159 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030955	protein coding gene	Chr8:25220610-25240607 (+)
CAST/EiJ	MGP_CASTEiJ_G0032528	protein coding gene	Chr8:28943693-28965119 (+)
CBA/J	MGP_CBAJ_G0033179	protein coding gene	Chr8:31807708-31829986 (+)
DBA/2J	MGP_DBA2J_G0033332	protein coding gene	Chr8:28335863-28355800 (+)
FVB/NJ	MGP_FVBNJ_G0033277	protein coding gene	Chr8:28055309-28075907 (+)
LP/J	MGP_LPJ_G0033422	protein coding gene	Chr8:29440979-29463100 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033319	protein coding gene	Chr8:31392077-31412853 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034024	protein coding gene	Chr8:29273365-29300468 (+)
PWK/PhJ	MGP_PWKPhJ_G0032240	protein coding gene	Chr8:27849809-27871774 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032073	protein coding gene	Chr8:28620404-28640442 (+)
WSB/EiJ	MGP_WSBEiJ_G0032644	protein coding gene	Chr8:29444947-29469348 (+)

Homology

• Human Ortholog
  RNF122, ring finger protein 122

• Vertebrate Orthologs
  8

• Human Ortholog
  RNF122, ring finger protein 122
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:21147

  NCBI Gene ID: 79845

  neXtProt AC: NX_Q9H9V4

  UniProt: Q9H9V4

  
  
• Chr Location
  8p12; chr8:33547754-33567128 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 11717
  1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 macaque, rhesus
  
• HCOP
  human homology predictions: RNF122
• Gene Tree
  Rnf122
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  10
• GO References
  3

• External Resources
  FuncBase

Expression

• cDNA Data
  13

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Rnf122 interacts with 275 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  8
• UniProt
  2
• CCDS
  CCDS22220.1

• Ensembl
  ENSMUSG00000039328 (Evidence)
• NCBI Gene
  68867

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000039328	Ensembl Gene Model | MGI Sequence Detail	19663	C57BL/6J
transcript	ENSMUST00000217278	Ensembl | MGI Sequence Detail	1726	Not Applicable
polypeptide	ENSMUSP00000150893	Ensembl | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR040098 RING finger protein 24/122
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 3

References

• Summaries
  All 24

  Gene Ontology 3

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

TSS for Rnf122:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2536	Chr8:31111593-31111614 (+)	-216 bp
Tssr76798	Chr8:31111789-31111799 (+)	-26 bp
Tssr76799	Chr8:31111816-31111891 (+)	34 bp
Tssr76800	Chr8:31111896-31111907 (+)	82 bp
Tssr76803	Chr8:31129402-31129412 (+)	17,587 bp