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Smim1 Gene Detail
Summary
  • Symbol
    Smim1
  • Name
    small integral membrane protein 1
  • Synonyms
    0610011H04Rik, 1190007F08Rik, 2700009I11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916109
    NCBI Gene: 68859
Location & Maps
more
  • Sequence Map
    Chr4:154020470-154026230 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      5761 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    SMIM1, small integral membrane protein 1 (Vel blood group)
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SMIM1, small integral membrane protein 1 (Vel blood group)
    Orthology source: HomoloGene
  • Synonyms
    Vel
  • Links
    NCBI Gene ID: 388588
    neXtProt AC: NX_B2RUZ4

  • Chr Location
    1p36.32; chr1:3772761-3775982 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Targeted
    3
  • Genomic Mutations
    3 involving Smim1
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010499 VEGA Gene Model | MGI Sequence Detail 5761 C57BL/6J ±  kb
transcript OTTMUST00000114160 VEGA | MGI Sequence Detail 5091 Not Applicable  
polypeptide OTTMUSP00000063714 VEGA | MGI Sequence Detail 78 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    42 from dbSNP Build 137
Protein
Information
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  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000030830 small integral membrane protein 1
  • InterPro Domains
    IPR031744 Protein of unknown function DUF4731
Molecular
Reagents
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  • All nucleic 17
    cDNA 17

    Microarray probesets 4
Other
Accession IDs
less
MGI:1918927, MGI:1919798
References
more
  • Summaries
    All 21
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/02/2016
MGI 6.02
The Jackson Laboratory