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Smim1
Gene Detail
Symbol

Name
ID
Smim1
small integral membrane protein 1
MGI:1916109
Synonyms
0610011H04Rik, 1190007F08Rik, 2700009I11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
83.79 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:154020470-154026230 bp, - strand
From VEGA annotation of GRCm38

  5761 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:130039  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog

Gene Tree: Smim1

Human
homologs
Human Homolog SMIM1, small integral membrane protein 1 (Vel blood group)
NCBI Gene ID 388588
neXtProt AC  NX_B2RUZ4
Human Synonyms  Vel
Human Chr (Location)  1p36.32; chr1:3772761-3775982 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Genomic Mutations involving Smim1 (2)
Interactions
Smim1 interacts with 7 markers (Mir16-1, Mir201, Mir505, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component extracellular vesicular exosome, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(17)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000010499 (Evidence)
Ensembl Gene ModelENSMUSG00000078350 (Evidence)
Entrez Gene68859 (Evidence)
Consensus CDS ProjectCCDS59664.1
International Mouse Knockout Project StatusSmim1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010499 VEGA Gene Model | MGI Sequence Detail 5761 C57BL/6J ±  kb
transcript OTTMUST00000114160 VEGA | MGI Sequence Detail 5091 Not Applicable 
polypeptide OTTMUSP00000063714 VEGA | MGI Sequence Detail 78 Not Applicable 

For the selected sequences
All sequences(95) RefSeq(9) UniProt(13)
Polymorphisms
SNPs within 2kb(42 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(22)
Other
accession IDs
MGI:1918927, MGI:1919798

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory