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Smim1
Gene Detail
Symbol

Name
ID
Smim1
small integral membrane protein 1
MGI:1916109
Synonyms
0610011H04Rik, 1190007F08Rik, 2700009I11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
83.79 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:154020470-154026230 bp, - strand
From VEGA annotation of GRCm38

  5761 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:130039  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog

HCOP human homology predictions: SMIM1
Gene Tree: Smim1

Human
homologs
SMIM1, small integral membrane protein 1 (Vel blood group)
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 388588
neXtProt AC: NX_B2RUZ4

Human Synonyms: Vel

Human Chr (Location): 1p36.32; chr1:3772761-3775982 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Genomic Mutations involving Smim1 (3)
Interactions
Smim1 interacts with 7 markers (Mir16-1, Mir201, Mir505, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component extracellular exosome, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(17)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000010499 (Evidence)
Ensembl Gene Model ENSMUSG00000078350 (Evidence)
Entrez Gene 68859 (Evidence)
Consensus CDS Project CCDS59664.1
International Mouse Phenotyping Consortium Status Smim1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010499 VEGA Gene Model | MGI Sequence Detail 5761 C57BL/6J ±  kb
transcript OTTMUST00000114160 VEGA | MGI Sequence Detail 5091 Not Applicable 
polypeptide OTTMUSP00000063714 VEGA | MGI Sequence Detail 78 Not Applicable 

For the selected sequences
All sequences(89) RefSeq(9) UniProt(7)
Polymorphisms
SNPs within 2kb(42 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(20)
Other
accession IDs
MGI:1918927, MGI:1919798

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory