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Pdcl3 Gene Detail
Summary
  • Symbol
    Pdcl3
  • Name
    phosducin-like 3
  • Synonyms
    1110061A19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916083
    NCBI Gene: 68833
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:38987814-38997236 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 17.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    179 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916083
protein coding gene Chr1:38985608-38997238 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015954
protein coding gene Chr1:37692732-37702588 (+)
A/J MGP_AJ_G0015938
protein coding gene Chr1:36651213-36660048 (+)
AKR/J MGP_AKRJ_G0015893
protein coding gene Chr1:37151030-37160349 (+)
BALB/cJ MGP_BALBcJ_G0015892
protein coding gene Chr1:36298165-36309933 (+)
C3H/HeJ MGP_C3HHeJ_G0015725
protein coding gene Chr1:37384969-37393588 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016345
protein coding gene Chr1:39288717-39298453 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014067
protein coding gene Chr1:33616785-33627674 (+)
CAST/EiJ MGP_CASTEiJ_G0015306
protein coding gene Chr1:37273327-37281528 (+)
CBA/J MGP_CBAJ_G0015697
protein coding gene Chr1:40416242-40425448 (+)
DBA/2J MGP_DBA2J_G0015798
protein coding gene Chr1:35938010-35950007 (+)
FVB/NJ MGP_FVBNJ_G0015800
protein coding gene Chr1:35476334-35484740 (+)
LP/J MGP_LPJ_G0015868
protein coding gene Chr1:38044201-38055550 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015820
protein coding gene Chr1:42492275-42500798 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016392
protein coding gene Chr1:37250970-37259342 (+)
PWK/PhJ MGP_PWKPhJ_G0015089
protein coding gene Chr1:35747876-35756155 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014871
protein coding gene Chr1:37174335-37183725 (+)
WSB/EiJ MGP_WSBEiJ_G0015368
protein coding gene Chr1:37199206-37208771 (+)



Homology
more
  • Human Ortholog
    PDCL3, phosducin like 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PDCL3, phosducin like 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HTPHLP, PHLP2A, PHLP3, VIAF, VIAF1
  • Links
    NCBI Gene ID: 79031
    neXtProt AC: NX_Q9H2J4
    UniProt: Q9H2J4

  • Chr Location
    2q11.2; chr2:100562956-100577472 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 7012
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PDCL3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68833 NCBI Gene Model | MGI Sequence Detail 9423 C57BL/6J ±  kb
transcript NM_026850 RefSeq | MGI Sequence Detail 1706 C57BL/6  
polypeptide Q8BVF2 UniProt | EBI | MGI Sequence Detail 240 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 102
    cDNA 102

    Microarray probesets 2
Other
Accession IDs
less
MGI:2138686
References
more
  • Summaries
    All 28
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:203489 Srinivasan S, et al., Identification of PDCL3 as a novel chaperone protein involved in the generation of functional VEGF receptor 2. J Biol Chem. 2013 Aug 9;288(32):23171-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory