About   Help   FAQ
Fendrr
Gene Detail
Symbol

Name
ID
Fendrr
Foxf1 adjacent non-coding developmental regulatory RNA
MGI:1916040
Synonyms
1110050K14Rik, linc-Foxf1a
Feature Type
lincRNA gene
Genetic Map
Chromosome 8
70.28 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:121054882-121083110 bp, - strand
From VEGA annotation of GRCm38

  28229 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HCOP human homology predictions: FENDRR
Gene Tree: Fendrr
Human
homologs
FENDRR, FOXF1 adjacent non-coding developmental regulatory RNA
Orthology source: HGNC

IDs:
NCBI Gene ID: 400550

Human Synonyms: FOXF1-AS1, lincFOXF1, TCONS_00024240

Human Chr (Location): 16q24.1; chr16:86474525-86508860 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
 
Homozygous null mice for one allele display complete neonatal lethality with respiratory failure and pulmonary hypoplasia. Chimeric null mice display complete embryonic lethality during organogenesis, omphalocele and ventricle myocardium hypoplasia.
 
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process embryonic organ development, lateral mesoderm development, ...
Component nucleus
Function core promoter binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (18)    Tissues (14)    Images (9)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 6
RT-PCR 12
cDNA source data(4)
Other mouse links: GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(4) Primer pair(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000043019 (Evidence)
Ensembl Gene Model ENSMUSG00000097336 (Evidence)
Entrez Gene 68790 (Evidence)
UniGene 246916
DFCI TC1600141, TC1613384
DoTS DT.91335359, DT.91284259
NIA Mouse Gene Index U030335
International Mouse Phenotyping Consortium Status Fendrr
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000043019 VEGA Gene Model | MGI Sequence Detail 28229 C57BL/6J ±  kb
transcript NR_130109 RefSeq | MGI Sequence Detail 2714 C57BL/6 

For the selected sequences
All sequences(19) RefSeq(2)
Polymorphisms
SNPs within 2kb(81 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:212084 Herriges MJ, et al., Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. Genes Dev. 2014 Jun 15;28(12):1363-79
All references(15)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/28/2015
MGI 5.22
The Jackson Laboratory