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Taf11
Gene Detail
 Symbol
Name
ID
Taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
MGI:1916026
Synonyms 1110038O14Rik, 28kDa, PRO214, TAF2I, TAFII28
Feature Type protein coding gene
Genetic Map
Chromosome 17
14.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:27901122-27909242 bp, - strand
From VEGA annotation of GRCm38

  8121 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55918  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: transcription initiation factor IID, TAF11 subunit
Gene Tree: Taf11

Human
homologs
Human Homolog TAF11, TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
NCBI Gene ID 6882
neXtProt AC  NX_Q15544
Human Synonyms  MGC:15243, TAF2I, TAFII28
Human Chr (Location)  6p21.31; chr6:34877778-34888071 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(6) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Taf11 interacts with 80 markers (Mir7-1, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process positive regulation by host of viral transcription, regulation of transcription, DNA-templated, ...
Component Golgi apparatus, nucleus, ...
Function DNA binding, protein heterodimerization activity, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (33)    Tissues (20)    Images (2)
Theiler Stages: 17, 22, 23
Assay TypeResults
RNA in situ 33
cDNA source data(63)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(63) cDNA(63)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000024178 (Evidence)
Ensembl Gene ModelENSMUSG00000024218 (Evidence)
Entrez Gene68776 (Evidence)
UniGene267998
DFCITC1576408
DoTSDT.493252
NIA Mouse Gene IndexU037600
Consensus CDS ProjectCCDS28571.1
International Mouse Knockout Project StatusTaf11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024178 VEGA Gene Model | MGI Sequence Detail 8121 C57BL/6J ±  kb
transcript OTTMUST00000059155 VEGA | MGI Sequence Detail 2207 Not Applicable 
polypeptide OTTMUSP00000028748 VEGA | MGI Sequence Detail 211 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(10) UniProt(1)
Polymorphisms SNPs within 2kb(80 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009072 Histone-fold
InterPro IPR006809 TAFII28-like protein
Protein Ontology PR:000016016 transcription initiation factor TFIID subunit 11
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:181994 Kamileri I, et al., Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2995-3000
All references(40)
Other
accession IDs
MGI:2146796, MGI:2146964, MGI:2147086

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory