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Ms4a6d Gene Detail
Summary
  • Symbol
    Ms4a6d
  • Name
    membrane-spanning 4-domains, subfamily A, member 6D
  • Synonyms
    Ms4a11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916024
    NCBI Gene: 68774
  • Member of
    Ms4ac cluster
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:11586606-11604804 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 8.45 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    176 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916024
protein coding gene Chr19:11586604-11604849 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0024852
protein coding gene Chr19:8464847-8478020 (-)
AKR/J MGP_AKRJ_G0024827
protein coding gene Chr19:8790402-8800134 (-)
BALB/cJ MGP_BALBcJ_G0024852
protein coding gene Chr19:8468734-8482529 (-)
C3H/HeJ MGP_C3HHeJ_G0024618
protein coding gene Chr19:8689270-8702810 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025300
protein coding gene Chr19:9428707-9439951 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022724
protein coding gene Chr19:8831351-8842564 (-)
CAST/EiJ MGP_CASTEiJ_G0024091
protein coding gene Chr19:8281059-8292477 (-)
CBA/J MGP_CBAJ_G0024592
protein coding gene Chr19:9486020-9497269 (-)
DBA/2J MGP_DBA2J_G0024719
protein coding gene Chr19:8434223-8449150 (-)
FVB/NJ MGP_FVBNJ_G0024686
protein coding gene Chr19:8471958-8484354 (-)
LP/J MGP_LPJ_G0024806
protein coding gene Chr19:8982535-8994576 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024713
protein coding gene Chr19:9382676-9395143 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025348
protein coding gene Chr19:8772372-8788708 (-)
PWK/PhJ MGP_PWKPhJ_G0023835
protein coding gene Chr19:7894404-7906065 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023641
protein coding gene Chr19:7932987-7944391 (-)
WSB/EiJ MGP_WSBEiJ_G0024153
protein coding gene Chr19:8626589-8638541 (-)



Homology
more
  • Human Ortholog
    MS4A6A, membrane spanning 4-domains A6A
  • Vertebrate Orthologs
    6
  • Human Ortholog
    MS4A6A, membrane spanning 4-domains A6A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    4SPAN3, 4SPAN3.2, CD20L3, CDA01, MS4A6, MST090, MSTP090
  • Links
    NCBI Gene ID: 64231
    neXtProt AC: NX_Q9H2W1
    UniProt: Q9H2W1

  • Chr Location
    11q12.2; chr11:60171607-60184666 (-)  GRCh38.p7

  • Human Ortholog
    MS4A6E, membrane spanning 4-domains A6E
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 245802
    neXtProt AC: NX_Q96DS6
    UniProt: Q96DS6

  • Chr Location
    11q12.2; chr11:60334882-60340968 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68774 NCBI Gene Model | MGI Sequence Detail 18199 C57BL/6J ±  kb
transcript NM_026835 RefSeq | MGI Sequence Detail 1401 C57BL/6  
polypeptide Q99N07 UniProt | EBI | MGI Sequence Detail 247 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:1927659, MGI:2147536
References
more
  • Summaries
    All 35
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:281762 Huang X, et al., VSIG4 mediates transcriptional inhibition of Nlrp3 and Il-1beta in macrophages. Sci Adv. 2019 Jan;5(1):eaau7426

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory