About   Help   FAQ
Phtf2 Gene Detail
Summary
  • Symbol
    Phtf2
  • Name
    putative homeodomain transcription factor 2
  • Synonyms
    1110054G21Rik, 9530062N20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916020
    NCBI Gene: 68770
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:20963662-21087122 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 9.83 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    519 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916020
 protein coding gene Chr5:20963661-21087122 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029310
 protein coding gene Chr5:18270952-18397003 (-)
A/J MGP_AJ_G0029275
 protein coding gene Chr5:17702000-17824029 (-)
AKR/J MGP_AKRJ_G0029226
 protein coding gene Chr5:18380696-18501053 (-)
BALB/cJ MGP_BALBcJ_G0029287
 protein coding gene Chr5:18131739-18251285 (-)
C3H/HeJ MGP_C3HHeJ_G0029006
 protein coding gene Chr5:18405603-18534373 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029740
 protein coding gene Chr5:19639996-19770978 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026979
 protein coding gene Chr5:15780167-15892731 (-)
CAST/EiJ MGP_CASTEiJ_G0028418
 protein coding gene Chr5:17756481-17887128 (-)
CBA/J MGP_CBAJ_G0028973
 protein coding gene Chr5:19845791-19986966 (-)
DBA/2J MGP_DBA2J_G0029125
 protein coding gene Chr5:17979785-18098962 (-)
FVB/NJ MGP_FVBNJ_G0029083
 protein coding gene Chr5:17390683-17514118 (-)
LP/J MGP_LPJ_G0029209
 protein coding gene Chr5:18694937-18814791 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029111
 protein coding gene Chr5:21178673-21304762 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029773
 protein coding gene Chr5:18043292-18161079 (-)
PWK/PhJ MGP_PWKPhJ_G0028141
 protein coding gene Chr5:17049367-17168261 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027974
 protein coding gene Chr5:17404951-17527632 (-)
WSB/EiJ MGP_WSBEiJ_G0028498
 protein coding gene Chr5:18076010-18197030 (-)



Homology
more
  • Human Ortholog
    PHTF2, putative homeodomain transcription factor 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHTF2, putative homeodomain transcription factor 2
  • Links
    NCBI Gene ID: 57157
    neXtProt AC: NX_Q8N3S3
    UniProt: Q8N3S3

  • Chr Location
    7q11.23-q21.11; chr7:77798773-77957504 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    5
  • cDNA Data
    15
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68770 NCBI Gene Model | MGI Sequence Detail 123461 C57BL/6J ±  kb
transcript NM_172992 RefSeq | MGI Sequence Detail 4839 C57BL/6  
polypeptide Q8CB19 UniProt | EBI | MGI Sequence Detail 747 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 4
Other
Accession IDs
less
MGI:2140879, MGI:2141297, MGI:2442896
References
more
  • Summaries
    All 44
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 18
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory