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Cdhr3 Gene Detail
Summary
  • Symbol
    Cdhr3
  • Name
    cadherin-related family member 3
  • Synonyms
    1110049B09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916014
    NCBI Gene: 68764
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:33033796-33092875 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 13.95 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    655 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916014
protein coding gene Chr12:33033795-33093040 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019673
protein coding gene Chr12:31083019-31149492 (-)
A/J MGP_AJ_G0019640
protein coding gene Chr12:30156225-30218702 (-)
AKR/J MGP_AKRJ_G0019611
protein coding gene Chr12:31143050-31209813 (-)
BALB/cJ MGP_BALBcJ_G0019617
protein coding gene Chr12:30378645-30441808 (-)
C3H/HeJ MGP_C3HHeJ_G0019421
protein coding gene Chr12:30983064-31056937 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020064
protein coding gene Chr12:32008925-32071663 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017689
protein coding gene Chr12:29446536-29506994 (-)
CAST/EiJ MGP_CASTEiJ_G0018976
protein coding gene Chr12:26029500-26101909 (-)
CBA/J MGP_CBAJ_G0019393
protein coding gene Chr12:33039972-33113338 (-)
DBA/2J MGP_DBA2J_G0019506
protein coding gene Chr12:29978816-30038870 (-)
FVB/NJ MGP_FVBNJ_G0019497
protein coding gene Chr12:29767389-29827284 (-)
LP/J MGP_LPJ_G0019576
protein coding gene Chr12:31161556-31225891 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019532
protein coding gene Chr12:32676869-32736724 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020104
protein coding gene Chr12:30644663-30708332 (-)
PWK/PhJ MGP_PWKPhJ_G0018743
protein coding gene Chr12:24750243-24812682 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018531
protein coding gene Chr12:25268288-25330064 (-)
WSB/EiJ MGP_WSBEiJ_G0019026
protein coding gene Chr12:30882254-30948689 (-)



Homology
more
  • Human Ortholog
    CDHR3, cadherin related family member 3
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CDHR3, cadherin related family member 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDH28
  • Links
    NCBI Gene ID: 222256
    neXtProt AC: NX_Q6ZTQ4
    UniProt: Q6ZTQ4

  • Chr Location
    7q22.3; chr7:105876773-106036431 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035860 Ensembl Gene Model | MGI Sequence Detail 59080 C57BL/6J ±  kb
transcript ENSMUST00000095774 Ensembl | MGI Sequence Detail 2953 Not Applicable  
polypeptide ENSMUSP00000093449 Ensembl | MGI Sequence Detail 831 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    Genomic 1
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:2145074
References
more
  • Summaries
    All 23
    Gene Ontology 5
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory