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Carmil1 Gene Detail
Summary
  • Symbol
    Carmil1
  • Name
    capping protein regulator and myosin 1 linker 1
  • Synonyms
    1110037D04Rik, Carmil, Lrrc16, Lrrc16a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915982
    NCBI Gene: 68732
  • Gene Overview
    MyGene.info: CARMIL1
Location & Maps
more
  • Sequence Map
    Chr13:24012344-24280795 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      268452 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 10.05 cM, cytoband A3.2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CARMIL1, capping protein regulator and myosin 1 linker 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CARMIL1, capping protein regulator and myosin 1 linker 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CARMIL, CARMIL1a, dJ501N12.1, dJ501N12.5, LRRC16, LRRC16A
  • Links
    NCBI Gene ID: 55604
    neXtProt AC: NX_Q5VZK9

  • Chr Location
    6p22.2; chr6:25279428-25620530 (+)  GRCh38.p2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    15 phenotype references
  • All Mutations and Alleles
    16
  • Chemically induced (other)
    1
  • Gene trapped
    10
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    2 involving Carmil1
  • Incidental Mutations
    Mutagenetix , APF , CvDC
No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    31
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    102
  • Tissues
    11
  • cDNA Data
    39
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000598 VEGA Gene Model | MGI Sequence Detail 268452 C57BL/6J ±  kb
transcript OTTMUST00000001189 VEGA | MGI Sequence Detail 4988 Not Applicable  
polypeptide OTTMUSP00000000557 VEGA | MGI Sequence Detail 1374 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2495 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 40
    cDNA 39
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2145230
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 15
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:218204 Jo YJ, et al., Actin-capping proteins play essential roles in the asymmetric division of maturing mouse oocytes. J Cell Sci. 2015 Jan 1;128(1):160-70
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/20/2016
MGI 6.05 		The Jackson Laboratory