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1110032F04Rik
Gene Detail
Symbol

Name
ID
1110032F04Rik
RIKEN cDNA 1110032F04 gene
MGI:1915975
Feature Type
protein coding gene
Genetic Map
Chromosome 3
32.06 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:68869586-68872163 bp, + strand
From VEGA annotation of GRCm38

  2578 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:110165  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 western clawed frog

HCOP human homology predictions: C3orf80
Gene Tree: 1110032F04Rik

Human
homologs
C3orf80, chromosome 3 open reading frame 80
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 401097
neXtProt AC: NX_F5H4A9

Human Chr (Location): 3q25.33; chr3:160223784-160290143 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
1110032F04Rik interacts with 217 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(7)
Other mouse links: GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000044906 (Evidence)
Ensembl Gene Model ENSMUSG00000046999 (Evidence)
Entrez Gene 68725 (Evidence)
UniGene 45741
DFCI TC1600908
DoTS DT.40150706
NIA Mouse Gene Index U003318
Consensus CDS Project CCDS50931.1
International Mouse Phenotyping Consortium Status 1110032F04Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044906 VEGA Gene Model | MGI Sequence Detail 2578 C57BL/6J ±  kb
transcript OTTMUST00000118030 VEGA | MGI Sequence Detail 2578 Not Applicable 
polypeptide OTTMUSP00000065921 VEGA | MGI Sequence Detail 247 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(5 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
All references(22)
Other
accession IDs
MGI:2139625

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory