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Slc44a2
Gene Detail
Symbol

Name
ID
Slc44a2
solute carrier family 44, member 2
MGI:1915932
Synonyms
1110028E10Rik, CTL2
Feature Type
protein coding gene
Genetic Map
Chromosome 9
7.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:21337828-21355025 bp, + strand
From Ensembl annotation of GRCm38

  17198 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10711  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc44a2

Human
homologs
Human Homolog SLC44A2, solute carrier family 44 (choline transporter), member 2
NCBI Gene ID 57153
neXtProt AC  NX_Q8IWA5
Human Synonyms  CTL2, PP1292
Human Chr (Location)  19p13.1; chr19:10602445-10644559 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(10) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc44a2 interacts with 181 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000057193 (Evidence)
Entrez Gene68682 (Evidence)
DFCITC1598997, TC1572061, TC1612438, TC1609610, TC1612603
DoTSDT.101382594, DT.101280078, DT.101382597, DT.101724901, DT.493508, DT.87025528, DT.94346127
NIA Mouse Gene IndexU042956
Consensus CDS ProjectCCDS22903.1
International Mouse Knockout Project StatusSlc44a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000057193 Ensembl Gene Model | MGI Sequence Detail 17198 C57BL/6J ±  kb
transcript ENSMUST00000034697 Ensembl | MGI Sequence Detail 3456 Not Applicable 
polypeptide ENSMUSP00000034697 Ensembl | MGI Sequence Detail 706 Not Applicable 

For the selected sequences
All sequences(49) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(64 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007603 Choline transporter-like
Protein Ontology PR:000015144 choline transporter-like protein 2
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:193640 Lo JC, et al., RAB-like 2 has an essential role in male fertility, sperm intra-flagellar transport, and tail assembly. PLoS Genet. 2012;8(10):e1002969
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory