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Fam172a Gene Detail
Summary
  • Symbol
    Fam172a
  • Name
    family with sequence similarity 172, member A
  • Synonyms
    1110033M05Rik, 2610318O14Rik, 53-E6, 9430037D06Rik, pEN87
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915925
    NCBI Gene: 68675
  • Gene Overview
    MyGene.info: FAM172A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:77708678-78166240 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 41.29 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1773 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915925
protein coding gene Chr13:77702033-78166240 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020782
protein coding gene Chr13:78249692-78737146 (+)
A/J MGP_AJ_G0020738
protein coding gene Chr13:75576473-76042593 (+)
AKR/J MGP_AKRJ_G0020711
protein coding gene Chr13:77878020-78352190 (+)
BALB/cJ MGP_BALBcJ_G0020734
protein coding gene Chr13:76107913-76562277 (+)
C3H/HeJ MGP_C3HHeJ_G0020528
protein coding gene Chr13:77565381-78021590 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021171
protein coding gene Chr13:80880336-81378526 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018739
protein coding gene Chr13:72265642-72700964 (+)
CAST/EiJ MGP_CASTEiJ_G0020046
protein coding gene Chr13:76659758-77126230 (+)
CBA/J MGP_CBAJ_G0020487
protein coding gene Chr13:83935634-84442370 (+)
DBA/2J MGP_DBA2J_G0020612
protein coding gene Chr13:75293723-75740681 (+)
FVB/NJ MGP_FVBNJ_G0020592
protein coding gene Chr13:74371553-74833672 (+)
LP/J MGP_LPJ_G0020685
protein coding gene Chr13:78525335-79004423 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020621
protein coding gene Chr13:82380498-82908083 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021211
protein coding gene Chr13:77208608-77689134 (+)
PWK/PhJ MGP_PWKPhJ_G0019799
protein coding gene Chr13:74184088-74636623 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019622
protein coding gene Chr13:73513823-73958960 (+)
WSB/EiJ MGP_WSBEiJ_G0020103
protein coding gene Chr13:77696716-78145701 (+)



Homology
more
  • Human Ortholog
    FAM172A, family with sequence similarity 172 member A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM172A, family with sequence similarity 172 member A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C5orf21, Toupee
  • Links
    NCBI Gene ID: 83989
    neXtProt AC: NX_Q8WUF8
    UniProt: Q8WUF8

  • Chr Location
    5q15; chr5:93615130-94111699 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68675 NCBI Gene Model | MGI Sequence Detail 457563 C57BL/6J ±  kb
transcript NM_138312 RefSeq | MGI Sequence Detail 4036 C57BL/6  
polypeptide Q3TNH5 UniProt | EBI | MGI Sequence Detail 417 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919788, MGI:2176345, MGI:2442300
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:260599 Belanger C, et al., Dysregulation of cotranscriptional alternative splicing underlies CHARGE syndrome. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E620-E629

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory