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Scgb3a1 Gene Detail
Summary
  • Symbol
    Scgb3a1
  • Name
    secretoglobin, family 3A, member 1
  • Synonyms
    1110030K16Rik, HIN-1, LuLeu2, UGRP2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915912
    NCBI Gene: 68662
  • Gene Overview
    MyGene.info: SCGB3A1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:49663610-49665118 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 29.75 cM, cytoband B1.2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    13 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915912
protein coding gene Chr11:49663595-49665118 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018235
protein coding gene Chr11:48802787-48804295 (+)
A/J MGP_AJ_G0018203
protein coding gene Chr11:46921109-46922617 (+)
AKR/J MGP_AKRJ_G0018173
protein coding gene Chr11:48426539-48428047 (+)
BALB/cJ MGP_BALBcJ_G0018173
protein coding gene Chr11:47206024-47207532 (+)
C3H/HeJ MGP_C3HHeJ_G0017986
protein coding gene Chr11:48424623-48426131 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018624
protein coding gene Chr11:50256309-50257817 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016276
protein coding gene Chr11:44546796-44548299 (+)
CAST/EiJ MGP_CASTEiJ_G0017548
protein coding gene Chr11:48388242-48389742 (+)
CBA/J MGP_CBAJ_G0017961
protein coding gene Chr11:52592782-52594290 (+)
DBA/2J MGP_DBA2J_G0018068
protein coding gene Chr11:46737376-46738884 (+)
FVB/NJ MGP_FVBNJ_G0018062
protein coding gene Chr11:46353258-46354766 (+)
LP/J MGP_LPJ_G0018143
protein coding gene Chr11:49131613-49133121 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018087
protein coding gene Chr11:54136702-54138210 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018668
protein coding gene Chr11:48526996-48528504 (+)
PWK/PhJ MGP_PWKPhJ_G0017326
protein coding gene Chr11:47121082-47122649 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017121
protein coding gene Chr11:48225720-48227219 (+)
WSB/EiJ MGP_WSBEiJ_G0017601
protein coding gene Chr11:48171348-48172856 (+)



Homology
more
  • Human Ortholog
    SCGB3A1, secretoglobin family 3A member 1
  • Vertebrate Orthologs
    5
  • Human Ortholog
    SCGB3A1, secretoglobin family 3A member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HIN1, HIN-1, LU105, PnSP-2, UGRP2
  • Links
    NCBI Gene ID: 92304
    neXtProt AC: NX_Q96QR1
    UniProt: Q96QR1

  • Chr Location
    5q35.3; chr5:180590105-180591487 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    3
  • Genomic Mutations
    1 involving Scgb3a1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064057 Ensembl Gene Model | MGI Sequence Detail 1509 C57BL/6J ±  kb
transcript ENSMUST00000043873 Ensembl | MGI Sequence Detail 493 Not Applicable  
polypeptide ENSMUSP00000043325 Ensembl | MGI Sequence Detail 104 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 16
    Primer pair 3

    Microarray probesets 3
References
more
  • Summaries
    All 45
    Developmental Gene Expression 7
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:204300 Ge Y, et al., RNAi screen reveals potentially novel roles of cytokines in myoblast differentiation. PLoS One. 2013;8(7):e68068

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory