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Lysmd3 Gene Detail
Summary
  • Symbol
    Lysmd3
  • Name
    LysM, putative peptidoglycan-binding, domain containing 3
  • Synonyms
    1110030H10Rik, MGC:7041
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915906
    NCBI Gene: 80289
  • Gene Overview
    MyGene.info: LYSMD3
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:81657663-81672871 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 43.64 cM, cytoband C3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915906
protein coding gene Chr13:81657657-81672871 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020787
protein coding gene Chr13:82425204-82439153 (+)
A/J MGP_AJ_G0020743
protein coding gene Chr13:79550545-79567039 (+)
AKR/J MGP_AKRJ_G0020716
protein coding gene Chr13:81906443-81921053 (+)
BALB/cJ MGP_BALBcJ_G0020739
protein coding gene Chr13:80098437-80110433 (+)
C3H/HeJ MGP_C3HHeJ_G0020533
protein coding gene Chr13:81655645-81667642 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021176
protein coding gene Chr13:85106209-85120322 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018744
protein coding gene Chr13:76018580-76033534 (+)
CAST/EiJ MGP_CASTEiJ_G0020051
protein coding gene Chr13:80747608-80761503 (+)
CBA/J MGP_CBAJ_G0020492
protein coding gene Chr13:88336743-88349486 (+)
DBA/2J MGP_DBA2J_G0020617
protein coding gene Chr13:79206044-79219583 (+)
FVB/NJ MGP_FVBNJ_G0020597
protein coding gene Chr13:78292143-78305268 (+)
LP/J MGP_LPJ_G0020690
protein coding gene Chr13:82647243-82661317 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020626
protein coding gene Chr13:87242205-87259385 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021216
protein coding gene Chr13:81323777-81338688 (+)
PWK/PhJ MGP_PWKPhJ_G0019804
protein coding gene Chr13:78122732-78136978 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019627
protein coding gene Chr13:77563560-77580755 (+)
WSB/EiJ MGP_WSBEiJ_G0020108
protein coding gene Chr13:81756482-81770043 (+)



Homology
more
  • Human Ortholog
    LYSMD3, LysM domain containing 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LYSMD3, LysM domain containing 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 116068
    neXtProt AC: NX_Q7Z3D4
    UniProt: Q7Z3D4

  • Chr Location
    5q14.3; chr5:90515626-90529616 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12722
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LYSMD3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035840 Ensembl Gene Model | MGI Sequence Detail 15209 C57BL/6J ±  kb
transcript ENSMUST00000224300 Ensembl | MGI Sequence Detail 4250 Not Applicable  
polypeptide ENSMUSP00000152940 Ensembl | MGI Sequence Detail 305 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 5
Other
Accession IDs
less
MGI:1933110
References
more
  • Summaries
    All 28
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory