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Fndc1 Gene Detail
Summary
  • Symbol
    Fndc1
  • Name
    fibronectin type III domain containing 1
  • Synonyms
    1110027O12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915905
    NCBI Gene: 68655
Location & Maps
more
  • Sequence Map
    Chr17:7738569-7827302 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      88734 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 4.77 cM, cytoband A1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    FNDC1, fibronectin type III domain containing 1
  • Human Ortholog
    FNDC1, fibronectin type III domain containing 1
    Orthology source: HGNC
  • Synonyms
    AGS8, bA243O10.1, dJ322A24.1, FNDC2, MEL4B3
  • Links
    NCBI Gene ID: 84624
    neXtProt AC: NX_Q4ZHG4

  • Chr Location
    6q25; chr6:159169397-159272108 (+)  GRCh38.p2

  • HCOP
    human homology predictions: FNDC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    8
  • Radiation induced
    7
  • Targeted
    1
  • Genomic Mutations
    7 involving Fndc1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035277 VEGA Gene Model | MGI Sequence Detail 88734 C57BL/6J ±  kb
transcript OTTMUST00000089968 VEGA | MGI Sequence Detail 5845 Not Applicable  
polypeptide OTTMUSP00000049234 VEGA | MGI Sequence Detail 1732 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    680 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR003961 Fibronectin type III
    IPR013783 Immunoglobulin-like fold
Molecular
Reagents
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  • All nucleic 31
    cDNA 31

    Microarray probesets 3
References
more
  • Summaries
    All 24
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory