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Polrmt
Gene Detail
 Symbol
Name
ID
Polrmt
polymerase (RNA) mitochondrial (DNA directed)
MGI:1915843
Synonyms 1110018N15Rik
Feature Type protein coding gene
Genetic Map
Chromosome 10
39.72 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:79736123-79746581 bp, - strand
From VEGA annotation of GRCm38

  10459 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37996  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: DNA-directed RNA polymerase
Gene Tree: Polrmt

Human
homologs
Human Homolog POLRMT, polymerase (RNA) mitochondrial (DNA directed)
NCBI Gene ID 5442
neXtProt AC  NX_O00411
Human Synonyms  APOLMT, h-mtRPOL, MTRNAP, MTRPOL
Human Chr (Location)  19p13.3; chr19:617223-633665 (-)  GRCh38
Alleles
and
phenotypes
All alleles(5) : Targeted(3) Gene trapped(2)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process transcription, DNA-templated, transcription from mitochondrial promoter
Component mitochondrial nucleoid, mitochondrion
Function DNA binding, DNA-directed RNA polymerase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (104)    Tissues (104)    Images (1)
Theiler Stages: 2, 3, 4, 5, 19, 22, 28
Assay TypeResults
RNA in situ 95
RT-PCR 9
cDNA source data(14)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(8)
Other database
links
VEGA Gene ModelOTTMUSG00000027870 (Evidence)
Ensembl Gene ModelENSMUSG00000020329 (Evidence)
Entrez Gene216151 (Evidence)
DFCITC1575063, TC1606612, TC1611311, TC1643901, TC1716953
DoTSDT.101153077, DT.101393644, DT.101739530, DT.102534361, DT.110629927, DT.532159, DT.60101334, DT.94224993, DT.94225019
NIA Mouse Gene IndexU031990
EC2.7.7.6
Consensus CDS ProjectCCDS23987.1
International Mouse Knockout Project StatusPolrmt
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027870 VEGA Gene Model | MGI Sequence Detail 10459 C57BL/6J ±  kb
transcript OTTMUST00000068992 VEGA | MGI Sequence Detail 3755 Not Applicable 
polypeptide OTTMUSP00000034996 VEGA | MGI Sequence Detail 1207 Not Applicable 

For the selected sequences
All sequences(87) RefSeq(6) UniProt(7)
Polymorphisms SNPs within 2kb(8 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024075 DNA-directed RNA polymerase, helix hairpin domain
InterPro IPR002092 DNA-directed RNA polymerase, phage-type
InterPro IPR002885 Pentatricopeptide repeat
Protein Ontology PR:000013010 DNA-directed RNA polymerase, mitochondrial
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:183842 Lodeiro MF, et al., Transcription from the second heavy-strand promoter of human mtDNA is repressed by transcription factor A in vitro. Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6513-8
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory