Caly
Gene Detail

Symbol

Name
ID

Caly
calcyon neuron-specific vesicular protein
MGI:1915816

Synonyms

0710001P07Rik, 1110004A22Rik, Calcyon, Drd1ip

Feature Type

protein coding gene

Genetic Map

Chromosome 7
85.07 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr7:140069880-140082548 bp, - strand From Ensembl annotation of GRCm38   12669 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:9256  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: neuron specific protein/calcyon
Gene Tree: Caly

Human
homologs

Human Homolog		CALY, calcyon neuron-specific vesicular protein
NCBI Gene ID		50632
neXtProt AC		NX_Q9NYX4
Human Synonyms		DRD1IP, NSG3
Human Chr (Location)		10q26.3; chr10:133325424-133336971 (-)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(6) : Targeted(5) Transgenic(1)
 

Neurons in homozygous null mice have defects in clathrin-mediated endocytosis (CME) that manifests as an absence of long term depression in post-synaptic currents of the hippocampus.

 

Interactions

Caly interacts with 67 markers (Mir9-1, Mir9-2, Mir9-3, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (12 annotations)

Process	clathrin coat assembly, dopamine receptor signaling pathway, ...
Component	cytoplasmic vesicle, integral component of membrane, ...
Function	clathrin light chain binding, protein complex binding

External Resources: FuncBase

Expression

Literature Summary: (2 records)

Data Summary: Results (199)    Tissues (28)    Images (24)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	199

cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(16) cDNA(16)
Microarray probesets(2)

Other database
links

Ensembl Gene Model	ENSMUSG00000025468 (Evidence)
Entrez Gene	68566 (Evidence)
UniGene	44241
DFCI	TC1592329, TC1584185, TC1592222
DoTS	DT.94289218, DT.101360351, DT.527742, DT.101146574
NIA Mouse Gene Index	U029418
Consensus CDS Project	CCDS21962.1
International Mouse Knockout Project Status	Caly

Sequences

Length	Strain/Species
genomic	ENSMUSG00000025468	Ensembl Gene Model | MGI Sequence Detail	12669	C57BL/6J
transcript	ENSMUST00000026541	Ensembl | MGI Sequence Detail	1260	Not Applicable
polypeptide	ENSMUSP00000026541	Ensembl | MGI Sequence Detail	226	Not Applicable

All sequences(35) RefSeq(14) UniProt(1)

Polymorphisms

SNPs within 2kb(55 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR009431	Calcyon neuron-specific vesicular protein
Protein Ontology	PR:000004987	neuron-specific vesicular protein calcyon

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197462 Dillman AA, et al., mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex. Nat Neurosci. 2013 Apr;16(4):499-506
All references(32)

Other
accession IDs

MGI:1923521