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Caly
Gene Detail
Symbol

Name
ID
Caly
calcyon neuron-specific vesicular protein
MGI:1915816
Synonyms
0710001P07Rik, 1110004A22Rik, Calcyon, Drd1ip
Feature Type
protein coding gene
Genetic Map
Chromosome 7
85.07 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:140069880-140082548 bp, - strand
From Ensembl annotation of GRCm38

  12669 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9256  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: CALY
Protein SuperFamily: neuron specific protein/calcyon
Gene Tree: Caly

Human
homologs
CALY, calcyon neuron-specific vesicular protein
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 50632
neXtProt AC: NX_Q9NYX4

Human Synonyms: DRD1IP, NSG3

Human Chr (Location): 10q26.3; chr10:133324072-133336971 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Targeted(5) Transgenic(1)
Incidental mutations (data from CvDC )
 
Neurons in homozygous null mice have defects in clathrin-mediated endocytosis (CME) that manifests as an absence of long term depression in post-synaptic currents of the hippocampus.
 
Interactions
Caly interacts with 67 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (199)    Tissues (28)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 199
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(16) cDNA(16)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000025468 (Evidence)
Entrez Gene 68566 (Evidence)
UniGene 44241
DFCI TC1592222, TC1584185, TC1592329
DoTS DT.527742, DT.101146574, DT.101360351, DT.94289218
NIA Mouse Gene Index U029418
Consensus CDS Project CCDS21962.1
International Mouse Phenotyping Consortium Status Caly
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025468 Ensembl Gene Model | MGI Sequence Detail 12669 C57BL/6J ±  kb
transcript ENSMUST00000026541 Ensembl | MGI Sequence Detail 1260 Not Applicable 
polypeptide ENSMUSP00000026541 Ensembl | MGI Sequence Detail 226 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(14) UniProt(1)
Polymorphisms
SNPs within 2kb(55 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009431 Calcyon neuron-specific vesicular protein
Protein Ontology PR:000004987 neuron-specific vesicular protein calcyon
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197462 Dillman AA, et al., mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex. Nat Neurosci. 2013 Apr;16(4):499-506
All references(30)
Other
accession IDs
MGI:1923521

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory