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Tefm
Gene Detail
Symbol

Name
ID
Tefm
transcription elongation factor, mitochondrial
MGI:1915800
Synonyms
1110002N22Rik, FLJ22729
Feature Type
protein coding gene
Genetic Map
Chromosome 11
47.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:80136678-80142175 bp, - strand
From VEGA annotation of GRCm38

  5498 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11657  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Tefm

Human
homologs
Human Homolog TEFM, transcription elongation factor, mitochondrial
NCBI Gene ID 79736
neXtProt AC  NX_Q96QE5
Human Synonyms  C17orf42
Human Chr (Location)  17q11.2; chr17:30898983-30906775 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(80) : Gene trapped(77) Targeted(3)
Incidental mutations (data from APF )
Interactions
Tefm interacts with 117 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process DNA metabolic process, oxidative phosphorylation, ...
Component mitochondrial matrix, mitochondrial nucleoid, ...
Function DNA polymerase processivity factor activity, poly(A) RNA binding
External Resources: FuncBase
Expression
cDNA source data(29)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(29) cDNA(29)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000000215 (Evidence)
Ensembl Gene ModelENSMUSG00000046909 (Evidence)
Entrez Gene68550 (Evidence)
UniGene18466
DFCITC1583449
DoTSDT.40183690, DT.40170640
NIA Mouse Gene IndexU033159
Consensus CDS ProjectCCDS36241.1
International Mouse Knockout Project StatusTefm
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000215 VEGA Gene Model | MGI Sequence Detail 5498 C57BL/6J ±  kb
transcript OTTMUST00000000635 VEGA | MGI Sequence Detail 1309 Not Applicable 
polypeptide OTTMUSP00000000277 VEGA | MGI Sequence Detail 364 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(6) UniProt(9)
Polymorphisms
SNPs within 2kb(25 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010994 RuvA domain 2-like
InterPro IPR023097 Tex RuvX-like domain
Protein Ontology PR:000030479 transcription elongation factor, mitochondrial
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory