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1110020A21Rik Gene Detail
Summary
  • Symbol
    1110020A21Rik
  • Name
    RIKEN cDNA 1110020A21 gene
  • Synonyms
    2600015P10Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1915781
    NCBI Gene: 68531
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:85224610-85265138 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 55.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    276 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915781
 lncRNA gene Chr17:85224610-85265138 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005758
 lincRNA gene Chr17:88154388-88157130 (-)
A/J MGP_AJ_G0005745
 lincRNA gene Chr17:85347558-85350298 (-)
AKR/J MGP_AKRJ_G0005724
 lincRNA gene Chr17:86747515-86750253 (-)
BALB/cJ MGP_BALBcJ_G0005725
 lincRNA gene Chr17:85197609-85200351 (-)
C3H/HeJ MGP_C3HHeJ_G0005673
 lincRNA gene Chr17:87608617-87611359 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005885
 lincRNA gene Chr17:91275311-91278053 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005616
 lincRNA gene Chr17:88399197-88401948 (-)
CBA/J MGP_CBAJ_G0005661
 lincRNA gene Chr17:95057219-95059961 (-)
DBA/2J MGP_DBA2J_G0005679
 lincRNA gene Chr17:83825133-83827875 (-)
FVB/NJ MGP_FVBNJ_G0005705
 lincRNA gene Chr17:83311507-83314248 (-)
LP/J MGP_LPJ_G0005760
 lincRNA gene Chr17:88930091-88932834 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005690
 lincRNA gene Chr17:95089288-95095146 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005885
 lincRNA gene Chr17:87234535-87237278 (-)
PWK/PhJ MGP_PWKPhJ_G0005560
 lincRNA gene Chr17:83408362-83411104 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005477
 lincRNA gene Chr17:84062153-84064871 (-)
WSB/EiJ MGP_WSBEiJ_G0005667
 lincRNA gene Chr17:88101787-88104530 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 68531 NCBI Gene Model | MGI Sequence Detail 40529 C57BL/6J ±  kb
transcript NR_027930 RefSeq | MGI Sequence Detail 853 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
Other
Accession IDs
less
MGI:1923837
References
more
  • Summaries
    All 17
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory