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Slc39a13 Gene Detail
Summary
  • Symbol
    Slc39a13
  • Name
    solute carrier family 39 (metal ion transporter), member 13
  • Synonyms
    1100001L14Rik, ZIP13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915677
    NCBI Gene: 68427
Location & Maps
more
  • Sequence Map
    Chr2:91061791-91070417 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      8627 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.44 cM, cytoband E1
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SLC39A13, solute carrier family 39 member 13
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC39A13, solute carrier family 39 member 13
    Orthology source: HomoloGene
  • Synonyms
    LZT-Hs9
  • Links
    NCBI Gene ID: 91252
    neXtProt AC: NX_Q96H72

  • Chr Location
    11p11.2; chr11:47407132-47416500 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with Slc39a13 mouse models; 1 with human SLC39A13 associations

Human Disease Mouse Models
       Spondylocheirodysplasia, Ehlers-Danlos Syndrome-Like   OMIM: 612350 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    28 phenotypes from 1 allele in 1 genetic background
    2 images
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Radiation induced
    1
  • Targeted
    5
  • Genomic Mutations
    4 involving Slc39a13
  • Incidental Mutations
Mice homozygous for disruption of this gene display skeletal abnormalities and dental abnormalities.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000014353 VEGA Gene Model | MGI Sequence Detail 8627 C57BL/6J ±  kb
transcript OTTMUST00000084164 VEGA | MGI Sequence Detail 1291 Not Applicable  
polypeptide OTTMUSP00000045319 VEGA | MGI Sequence Detail 374 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    24 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000015127 zinc transporter ZIP13
  • InterPro Domains
    IPR003689 Zinc/iron permease
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 3
Other
Accession IDs
less
MGI:3035256
References
more
  • Summaries
    All 33
    Diseases 1
    Gene Ontology 5
    Phenotypes 13
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:227247 Brommage R, et al., High-throughput screening of mouse gene knockouts identifies established and novel skeletal phenotypes. Bone Res. 2014;2:14034

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory