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Ankrd13a
Gene Detail
Symbol

Name
ID
Ankrd13a
ankyrin repeat domain 13a
MGI:1915670
Synonyms
1100001D10Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 5
55.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:114774677-114806200 bp, + strand
From VEGA annotation of GRCm38

  31524 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23814  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: ANKRD13A
Gene Tree: Ankrd13a

Human
homologs
ANKRD13A, ankyrin repeat domain 13A
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 88455
neXtProt AC: NX_Q8IZ07

Human Synonyms: ANKRD13, NY-REN-25

Human Chr (Location): 12q24.11; chr12:109999169-110039432 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(9) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ankrd13a interacts with 214 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component endosome, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (3)    Tissues (3)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 3
cDNA source data(170)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase ankrd13a    NEW 
Molecular
reagents
All nucleic(170) cDNA(170)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000014590 (Evidence)
Ensembl Gene Model ENSMUSG00000041870 (Evidence)
Entrez Gene 68420 (Evidence)
UniGene 275554
DFCI TC1572326, TC1585395
Consensus CDS Project CCDS19572.1
International Mouse Phenotyping Consortium Status Ankrd13a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000014590 VEGA Gene Model | MGI Sequence Detail 31524 C57BL/6J ±  kb
transcript OTTMUST00000034604 VEGA | MGI Sequence Detail 3717 Not Applicable 
polypeptide OTTMUSP00000015490 VEGA | MGI Sequence Detail 588 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(4) UniProt(6)
Polymorphisms
SNPs within 2kb(137 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002110 Ankyrin repeat
InterPro IPR020683 Ankyrin repeat-containing domain
InterPro IPR021832 Ankyrin repeat domain-containing protein 13
InterPro IPR003903 Ubiquitin interacting motif
Protein Ontology PR:000031396 ankyrin repeat domain-containing protein 13A
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:2141095

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory