0610039K10Rik Gene Detail

Summary

• Symbol
  0610039K10Rik
• Name
  RIKEN cDNA 0610039K10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915636
  NCBI Gene: 68386
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:163486770-163487720 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 84.39 cM, cytoband H3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915636	lncRNA gene	Chr2:163486683-163487721 (+)
129S1/SvImJ	ENSMUSG00200017536	lncRNA gene	Chr2:160382049-160383202 (+)
A/J	ENSMUSG00195023318	lncRNA gene	Chr2:160722207-160723158 (+)
AKR/J	ENSMUSG00220013975	lncRNA gene	Chr2:160049524-160050475 (+)
BALB/cJ	ENSMUSG00180050134	lncRNA gene	Chr2:160175934-160176885 (+)
C3H/HeJ	ENSMUSG00175051984	lncRNA gene	Chr2:160925693-160926644 (+)
C57BL/6NJ	ENSMUSG00215039069	lncRNA gene	Chr2:160356629-160357580 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003305	antisense lncRNA gene	Chr2:155489993-155490944 (+)
CAST/EiJ	ENSTCUG00005046543	lncRNA gene	Chr2:159290634-159291579 (+)
CBA/J	ENSMUSG00210017212	lncRNA gene	Chr2:160856721-160857672 (+)
DBA/2J	ENSMUSG00185050185	lncRNA gene	Chr2:160592858-160593809 (+)
FVB/NJ	ENSMUSG00205046006	lncRNA gene	Chr2:159615705-159616656 (+)
JF1/MsJ	ENSUMUG00000039490	lncRNA gene	Chr2:160234384-160235336 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190047790	lncRNA gene	Chr2:160232803-160233754 (+)
NZO/HlLtJ	ENSMUSG00225053309	lncRNA gene	Chr2:170155226-170156177 (+)
PWK/PhJ	ENSLUMG00010049658	lncRNA gene	Chr2:160140422-160141373 (+)
SPRET/EiJ	ENSMSPG00010040489	lncRNA gene	Chr2:162909824-162910777 (+)
WSB/EiJ	ENSIUOG00005046632	lncRNA gene	Chr2:159981238-159982189 (+)

Homology

• Gene Tree
  0610039K10Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000058812 (Evidence)
• NCBI Gene
  68386

Representative Sequences			Length	Strain/Species
genomic	68386	NCBI Gene Model | MGI Sequence Detail	951	C57BL/6J
transcript	NR_028113	RefSeq | MGI Sequence Detail	951	C57BL/6
polypeptide	Q9DCF0	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 0610039K10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21481	Chr2:163487160-163487174 (+)	397 bp