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Ift20
Gene Detail
Symbol

Name
ID
Ift20
intraflagellar transport 20
MGI:1915585
Synonyms
0610009H04Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
46.74 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:78536361-78541737 bp, + strand
From VEGA annotation of GRCm38

  5377 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49559  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: IFT20
Gene Tree: Ift20

Human
homologs
IFT20, intraflagellar transport 20
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 90410
neXtProt AC: NX_Q8IY31

Human Chr (Location): 17q11.2; chr17:28328325-28335489 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(3) Targeted(7)
Genomic Mutations involving Ift20 (1)
 
Mice homozygous for a null mutation die before birth. Mice with conditional loss in renal collecting ducts lack primary cilia and develop renal cysts.
 
Interactions
Ift20 interacts with 68 markers (Mir1a-1, Mir1a-2, Mir22, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (53 annotations)
Process cardiac muscle cell differentiation, cell projection organization, ...
Component cell, cell projection, ...
Function opsin binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
cDNA source data(114)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ift20 ; ZFIN ift20    NEW 
Molecular
reagents
All nucleic(114) cDNA(114)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000000139 (Evidence)
Ensembl Gene Model ENSMUSG00000001105 (Evidence)
Entrez Gene 55978 (Evidence)
UniGene 358671
DFCI TC1658232, TC1585772, TC1582974, TC1574938
DoTS DT.110536989, DT.101377179, DT.94342829, DT.94342810
NIA Mouse Gene Index U013024
Consensus CDS Project CCDS25111.1
International Mouse Phenotyping Consortium Status Ift20
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000139 VEGA Gene Model | MGI Sequence Detail 5377 C57BL/6J ±  kb
transcript OTTMUST00000000450 VEGA | MGI Sequence Detail 1141 Not Applicable 
polypeptide OTTMUSP00000000193 VEGA | MGI Sequence Detail 132 Not Applicable 

For the selected sequences
All sequences(44) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(21 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000008934 intraflagellar transport protein 20
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:217667 May-Simera HL, et al., Ciliary proteins Bbs8 and Ift20 promote planar cell polarity in the cochlea. Development. 2015 Feb 1;142(3):555-66
All references(57)
Other
accession IDs
MGI:2144373

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory