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Stn1 Gene Detail
Summary
  • Symbol
    Stn1
  • Name
    STN1, CST complex subunit
  • Synonyms
    0610009H20Rik, 2310057J23Rik, Obfc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915581
    NCBI Gene: 108689
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:47501048-47537121 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 39.64 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    358 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915581
protein coding gene Chr19:47501033-47537507 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025230
protein coding gene Chr19:47321193-47357785 (-)
A/J MGP_AJ_G0025206
protein coding gene Chr19:44948735-44985726 (-)
AKR/J MGP_AKRJ_G0025175
protein coding gene Chr19:46415087-46456474 (-)
BALB/cJ MGP_BALBcJ_G0025201
protein coding gene Chr19:45004348-45040938 (-)
C3H/HeJ MGP_C3HHeJ_G0024961
protein coding gene Chr19:46599838-46638949 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025644
protein coding gene Chr19:48448588-48488625 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023057
protein coding gene Chr19:44179933-44217199 (-)
CAST/EiJ MGP_CASTEiJ_G0024426
protein coding gene Chr19:46424525-46462321 (-)
CBA/J MGP_CBAJ_G0024941
protein coding gene Chr19:50899258-50955104 (-)
DBA/2J MGP_DBA2J_G0025073
protein coding gene Chr19:44756682-44795151 (-)
FVB/NJ MGP_FVBNJ_G0025034
protein coding gene Chr19:44556926-44593660 (-)
LP/J MGP_LPJ_G0025159
protein coding gene Chr19:47211869-47252420 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025065
protein coding gene Chr19:50156911-50198987 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025702
protein coding gene Chr19:46534926-46572193 (-)
PWK/PhJ MGP_PWKPhJ_G0024175
protein coding gene Chr19:44731509-44770641 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023978
protein coding gene Chr19:45190230-45230162 (-)
WSB/EiJ MGP_WSBEiJ_G0024496
protein coding gene Chr19:46691354-46730507 (-)



Homology
more
  • Human Ortholog
    STN1, STN1 subunit of CST complex
  • Vertebrate Orthologs
    10
  • Human Ortholog
    STN1, STN1 subunit of CST complex
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AAF44, AAF-44, bA541N10.2, OBFC1, RPA-32
  • Links
    NCBI Gene ID: 79991
    neXtProt AC: NX_Q9H668
    UniProt: Q9H668

  • Chr Location
    10q24.33; chr10:103856811-103918287 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 108689 NCBI Gene Model | MGI Sequence Detail 36074 C57BL/6J ±  kb
transcript NM_175360 RefSeq | MGI Sequence Detail 1992 C57BL/6  
polypeptide Q8K2X3 UniProt | EBI | MGI Sequence Detail 378 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000011582 oligonucleotide/oligosaccharide-binding fold-containing protein 1
  • PDB
  • InterPro Domains
    IPR014647 CST complex subunit Stn1
    IPR018856 CST complex subunit Stn1, N-terminal
    IPR012340 Nucleic acid-binding, OB-fold
    IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
    IPR040260 Replication factor A protein-like
    IPR015253 Stn1, C-terminal
    IPR036390 Winged helix DNA-binding domain superfamily
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916898, MGI:2147515
References
more
  • Summaries
    All 30
    Gene Ontology 8
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory