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Tsr3 Gene Detail
Summary
  • Symbol
    Tsr3
  • Name
    TSR3 20S rRNA accumulation
  • Synonyms
    0610007P22Rik, 1110014B11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915577
    NCBI Gene: 68327
  • Gene Overview
    MyGene.info: TSR3
Location & Maps
more
  • Sequence Map
    Chr17:25240170-25242798 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2629 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.53 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TSR3, TSR3, acp transferase ribosome maturation factor
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TSR3, TSR3, acp transferase ribosome maturation factor
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C16orf42
  • Links
    NCBI Gene ID: 115939
    neXtProt AC: NX_Q9UJK0

  • Chr Location
    16p13.3; chr16:1349240-1351872 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 6922
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: TSR3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    6
  • Gene trapped
    3
  • Radiation induced
    2
  • Targeted
    1
  • Genomic Mutations
    2 involving Tsr3
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000015126 Ensembl Gene Model | MGI Sequence Detail 2629 C57BL/6J ±  kb
transcript ENSMUST00000063574 Ensembl | MGI Sequence Detail 1192 Not Applicable  
polypeptide ENSMUSP00000068511 Ensembl | MGI Sequence Detail 323 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    60 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000030855 ribosome biogenesis protein TSR3 homolog
  • InterPro Domains
    IPR022968 Ribosome biogenesis protein
    IPR007177 Ribosome biogenesis protein, C-terminal
    IPR007209 RNase L inhibitor RLI, possible metal-binding domain
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:1926015, MGI:2142654
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory