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Ncapd2 Gene Detail
Summary
  • Symbol
    Ncapd2
  • Name
    non-SMC condensin I complex, subunit D2
  • Synonyms
    2810406C15Rik, 2810465G24Rik, CAP-D2, CNAP1, mKIAA0159
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915548
    NCBI Gene: 68298
  • Gene Overview
    MyGene.info: NCAPD2
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:125168007-125191701 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 59.32 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    264 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915548
 protein coding gene Chr6:125168007-125191748 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031289
 protein coding gene Chr6:128500804-128526469 (-)
A/J MGP_AJ_G0031259
 protein coding gene Chr6:123652962-123676793 (-)
AKR/J MGP_AKRJ_G0031187
 protein coding gene Chr6:127028600-127053741 (-)
BALB/cJ MGP_BALBcJ_G0031267
 protein coding gene Chr6:123251220-123275256 (-)
C3H/HeJ MGP_C3HHeJ_G0030990
 protein coding gene Chr6:127102133-127125631 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031723
 protein coding gene Chr6:131882299-131907810 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028872
 protein coding gene Chr6:120858948-120882512 (-)
CAST/EiJ MGP_CASTEiJ_G0030371
 protein coding gene Chr6:127303359-127327192 (-)
CBA/J MGP_CBAJ_G0030951
 protein coding gene Chr6:136940659-136966926 (-)
DBA/2J MGP_DBA2J_G0031107
 protein coding gene Chr6:122584475-122608839 (-)
FVB/NJ MGP_FVBNJ_G0031057
 protein coding gene Chr6:121498016-121521606 (-)
LP/J MGP_LPJ_G0031187
 protein coding gene Chr6:128665029-128689802 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031095
 protein coding gene Chr6:140971356-140998548 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031758
 protein coding gene Chr6:126931087-126955233 (-)
PWK/PhJ MGP_PWKPhJ_G0030086
 protein coding gene Chr6:120827089-120851353 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029915
 protein coding gene Chr6:125007464-125031246 (-)
WSB/EiJ MGP_WSBEiJ_G0030456
 protein coding gene Chr6:127300614-127326638 (-)



Homology
more
  • Human Ortholog
    NCAPD2, non-SMC condensin I complex subunit D2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCAPD2, non-SMC condensin I complex subunit D2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAP-D2, CNAP1, hCAP-D2, MCPH21
  • Links
    NCBI Gene ID: 9918
    neXtProt AC: NX_Q15021
    UniProt: Q15021

  • Chr Location
    12p13.31; chr12:6494132-6531966 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    34
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    13
  • Tissues
    11
  • cDNA Data
    373
  • Literature Summary
    5
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038252 Ensembl Gene Model | MGI Sequence Detail 23695 C57BL/6J ±  kb
transcript ENSMUST00000043848 Ensembl | MGI Sequence Detail 4629 Not Applicable  
polypeptide ENSMUSP00000042260 Ensembl | MGI Sequence Detail 1392 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR011989 Armadillo-like helical
    IPR016024 Armadillo-type fold
    IPR032682 Condensin complex subunit 1, C-terminal
    IPR024324 Condensin complex subunit 1, N-terminal
    IPR007673 Condensin subunit 1
    IPR026971 Condensin subunit 1/Condensin-2 complex subunit D3
Molecular
Reagents
less
  • All nucleic 374
    cDNA 374

    Microarray probesets 4
Other
Accession IDs
less
MGI:1920064
References
more
  • Summaries
    All 44
    Developmental Gene Expression 5
    Gene Ontology 9
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:222181 Nishide K, et al., Overlapping and non-overlapping functions of condensins I and II in neural stem cell divisions. PLoS Genet. 2014 Dec;10(12):e1004847
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
01/08/2019
MGI 6.13 		The Jackson Laboratory