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Smu1 Gene Detail
Summary
  • Symbol
    Smu1
  • Name
    smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
  • Synonyms
    2600001O03Rik, 2610203K23Rik, SMU-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915546
    NCBI Gene: 74255
  • Gene Overview
    MyGene.info: SMU1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:40736542-40757923 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 20.46 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915546
protein coding gene Chr4:40735649-40757923 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028147
protein coding gene Chr4:38625336-38652526 (-)
A/J MGP_AJ_G0028105
protein coding gene Chr4:37178252-37202775 (-)
AKR/J MGP_AKRJ_G0028068
protein coding gene Chr4:38117843-38143702 (-)
BALB/cJ MGP_BALBcJ_G0028117
protein coding gene Chr4:37503169-37524742 (-)
C3H/HeJ MGP_C3HHeJ_G0027845
protein coding gene Chr4:38657382-38680196 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028558
protein coding gene Chr4:40061125-40088630 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025899
protein coding gene Chr4:34833675-34854144 (-)
CAST/EiJ MGP_CASTEiJ_G0027301
protein coding gene Chr4:38318269-38343477 (-)
CBA/J MGP_CBAJ_G0027817
protein coding gene Chr4:41407641-41436531 (-)
DBA/2J MGP_DBA2J_G0027961
protein coding gene Chr4:37097253-37119544 (-)
FVB/NJ MGP_FVBNJ_G0027928
protein coding gene Chr4:36431342-36452689 (-)
LP/J MGP_LPJ_G0028069
protein coding gene Chr4:38692593-38720359 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027961
protein coding gene Chr4:44761285-44790366 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028617
protein coding gene Chr4:38228146-38252506 (-)
PWK/PhJ MGP_PWKPhJ_G0027020
protein coding gene Chr4:37093761-37115848 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026845
protein coding gene Chr4:37769900-37955883 (-)
WSB/EiJ MGP_WSBEiJ_G0027377
protein coding gene Chr4:38178000-38203777 (-)



Homology
more
  • Human Ortholog
    SMU1, SMU1, DNA replication regulator and spliceosomal factor
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SMU1, SMU1, DNA replication regulator and spliceosomal factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BWD, fSAP57, SMU-1
  • Links
    NCBI Gene ID: 55234
    neXtProt AC: NX_Q2TAY7
    UniProt: Q2TAY7

  • Chr Location
    9p21.1; chr9:33041852-33076716 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10079
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SMU1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028409 Ensembl Gene Model | MGI Sequence Detail 21382 C57BL/6J ±  kb
transcript ENSMUST00000030117 Ensembl | MGI Sequence Detail 2418 Not Applicable  
polypeptide ENSMUSP00000030117 Ensembl | MGI Sequence Detail 513 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 210
    cDNA 210

    Microarray probesets 6
Other
Accession IDs
less
MGI:1891739, MGI:1921505, MGI:2140375, MGI:2140601
References
more
  • Summaries
    All 36
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory