Aar2
Gene Detail

Symbol Name ID

Aar2 AAR2 splicing factor homolog (S. cerevisiae) MGI:1915545

Synonyms

0610011L14Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 2

77.54 cM, cytoband H2
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr2:156547584-156568972 bp, + strand From VEGA annotation of GRCm38   21389 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9170  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: U5 snRNP recycling factor Aar2
Gene Tree: Aar2

Human homologs

Human Homolog		AAR2, AAR2 splicing factor homolog (S. cerevisiae)
NCBI Gene ID		25980
neXtProt AC		NX_Q9Y312
Human Synonyms		C20orf4
Human Chr (Location)		20pter-q12; chr20:34824447-34844853 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(13) : Gene trapped(13)

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	biological_process
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (5)    Tissues (5)   
Theiler Stages: 15, 19, 22

Assay Type	Results
RNA in situ	5

cDNA source data(85)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(85) cDNA(85)
Microarray probesets(5)

Other database links

VEGA Gene Model	OTTMUSG00000015877 (Evidence)
Ensembl Gene Model	ENSMUSG00000027628 (Evidence)
Entrez Gene	68295 (Evidence)
UniGene	253648
DFCI	TC1572645
DoTS	DT.532945, DT.91356209
NIA Mouse Gene Index	U002723
Consensus CDS Project	CCDS16967.1
International Mouse Knockout Project Status	Aar2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000015877	VEGA Gene Model | MGI Sequence Detail	21389	C57BL/6J
transcript	OTTMUST00000037738	VEGA | MGI Sequence Detail	2766	Not Applicable
polypeptide	OTTMUSP00000016926	VEGA | MGI Sequence Detail	384	Not Applicable

All sequences(70) RefSeq(4) UniProt(4)

Polymorphisms

SNPs(88 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR007946	A1 cistron-splicing factor, AAR2
Protein Ontology	PR:000031226	protein AAR2 homolog

References

(Earliest) J:65653 Wertz K, et al., Large-scale screen for genes involved in gonad development. Mech Dev. 2000 Nov;98(1-2):51-70
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)