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Yipf1
Gene Detail
 Symbol
Name
ID
Yipf1
Yip1 domain family, member 1
MGI:1915532
Synonyms C030002N13Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
50.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:107314363-107359823 bp, + strand
From VEGA annotation of GRCm38

  45461 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5898  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: Yip5
Gene Tree: Yipf1

Human
homologs
Human Homolog YIPF1, Yip1 domain family, member 1
NCBI Gene ID 54432
neXtProt AC  NX_Q9Y548
Human Synonyms  DJ167A19.1, FinGER1
Human Chr (Location)  1p33-p32.1; chr1:53851719-53889818 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(6) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Yipf1 interacts with 37 markers (Mir20a, Mir30a, Mir30d, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process biological_process
Component integral component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(59)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(59) cDNA(59)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000008802 (Evidence)
Ensembl Gene ModelENSMUSG00000057375 (Evidence)
Entrez Gene230584 (Evidence)
UniGene29118
DFCITC1576202, TC1607625, TC1627541, TC1732547
DoTSDT.101721539, DT.110795652, DT.492557, DT.91292433, DT.94276256
NIA Mouse Gene IndexU004602
Consensus CDS ProjectCCDS18437.1
International Mouse Knockout Project StatusYipf1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008802 VEGA Gene Model | MGI Sequence Detail 45461 C57BL/6J ±  kb
transcript OTTMUST00000020016 VEGA | MGI Sequence Detail 1321 Not Applicable 
polypeptide OTTMUSP00000009184 VEGA | MGI Sequence Detail 306 Not Applicable 

For the selected sequences
All sequences(66) RefSeq(6) UniProt(4)
Polymorphisms SNPs within 2kb(438 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006977 Yip1 domain
Protein Ontology PR:000017531 protein YIPF1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory