About   Help   FAQ
Ddx39 Gene Detail
Summary
  • Symbol
    Ddx39
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
  • Synonyms
    2610307C23Rik, BAT1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915528
    NCBI Gene: 68278
  • Gene Overview
    MyGene.info: DDX39A
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:83715177-83723351 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 40.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915528
protein coding gene Chr8:83715177-83726892 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033839
protein coding gene Chr8:84559917-84572795 (+)
A/J MGP_AJ_G0033822
protein coding gene Chr8:81253965-81265678 (+)
AKR/J MGP_AKRJ_G0033748
protein coding gene Chr8:83650904-83662604 (+)
BALB/cJ MGP_BALBcJ_G0033815
protein coding gene Chr8:81354816-81366518 (+)
C3H/HeJ MGP_C3HHeJ_G0033525
protein coding gene Chr8:84269249-84280972 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034335
protein coding gene Chr8:87778979-87790690 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031277
protein coding gene Chr8:75039424-75050718 (+)
CAST/EiJ MGP_CASTEiJ_G0032855
protein coding gene Chr8:83678319-83690059 (+)
CBA/J MGP_CBAJ_G0033503
protein coding gene Chr8:90936241-90947950 (+)
DBA/2J MGP_DBA2J_G0033656
protein coding gene Chr8:80893789-80905512 (+)
FVB/NJ MGP_FVBNJ_G0033602
protein coding gene Chr8:79806345-79819387 (+)
LP/J MGP_LPJ_G0033746
protein coding gene Chr8:84661639-84673338 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033644
protein coding gene Chr8:93426424-93438130 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034352
protein coding gene Chr8:83622006-83635105 (+)
PWK/PhJ MGP_PWKPhJ_G0032559
protein coding gene Chr8:80107633-80119596 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032396
protein coding gene Chr8:82422740-82435886 (+)
WSB/EiJ MGP_WSBEiJ_G0032968
protein coding gene Chr8:84030037-84043026 (+)



Homology
more
  • Human Ortholog
    DDX39A, DExD-box helicase 39A
  • Vertebrate Orthologs
    8
  • Human Ortholog
    DDX39A, DExD-box helicase 39A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAT1, BAT1L, DDX39, DDXL, URH49
  • Links
    NCBI Gene ID: 10212
    neXtProt AC: NX_O00148
    UniProt: O00148

  • Chr Location
    19p13.12; chr19:14408798-14419383 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    37 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68278 NCBI Gene Model | MGI Sequence Detail 8175 C57BL/6J ±  kb
transcript NR_156447 RefSeq | MGI Sequence Detail 3943 C57BL/6  
polypeptide Q8VDW0 UniProt | EBI | MGI Sequence Detail 427 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 189
    cDNA 188
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 62
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 37
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54:113-145
  • Latest
    J:266142 Grosjean F, et al., Pharmacologic control of oxidative stress and inflammation determines whether diabetic glomerulosclerosis progresses or decreases: A pilot study in sclerosis-prone mice. PLoS One. 2018;13(9):e0204366

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory