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Ddx39 Gene Detail
Summary
  • Symbol
    Ddx39
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
  • Synonyms
    2610307C23Rik, BAT1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915528
    NCBI Gene: 68278
  • Gene Overview
    MyGene.info: DDX39A
Location & Maps
more
  • Sequence Map
    Chr8:83715177-83726892 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11716 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 40.22 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    DDX39A, DExD-box helicase 39A
  • Vertebrate Orthologs
    8
  • Human Ortholog
    DDX39A, DExD-box helicase 39A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAT1, BAT1L, DDX39, DDXL, URH49
  • Links
    NCBI Gene ID: 10212
    neXtProt AC: NX_O00148

  • Chr Location
    19p13.12; chr19:14408798-14419383 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    36 phenotype references
  • All Mutations and Alleles
    57
  • Chemically induced (other)
    1
  • Gene trapped
    52
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Ddx39
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026023 VEGA Gene Model | MGI Sequence Detail 11716 C57BL/6J ±  kb
transcript OTTMUST00000150316 VEGA | MGI Sequence Detail 3836 Not Applicable  
polypeptide OTTMUSP00000077937 VEGA | MGI Sequence Detail 427 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    86 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 188
    cDNA 187
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 36
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory