Zfp85os Gene Detail

Summary

• Symbol
  Zfp85os
• Name
  zinc finger protein 85, opposite strand
• Synonyms
  4930441O14Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1915521
  NCBI Gene: 68271
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:67877381-67904957 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.72 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  732 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915521	antisense lncRNA gene	Chr13:67876715-67904957 (+)
129S1/SvImJ	ENSMUSG00200014153	lncRNA gene	Chr13:62642399-62670018 (+)
A/J	ENSMUSG00195029156	lncRNA gene	Chr13:62913455-62941094 (+)
AKR/J	ENSMUSG00220040614	lncRNA gene	Chr13:61878145-61905763 (+)
BALB/cJ	ENSMUSG00180025659	lncRNA gene	Chr13:63392852-63420490 (+)
C3H/HeJ	ENSMUSG00175008324	lncRNA gene	Chr13:63704432-63732079 (+)
C57BL/6NJ	ENSMUSG00215007391	protein coding gene	Chr13:63403531-63434049 (+)
C57BL/6NJ	ENSMUSG00215018853	lncRNA gene	Chr13:63403518-63431142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002828	antisense lncRNA gene	Chr13:62986033-63013509 (+)
CAST/EiJ	ENSTCUG00005012060	lncRNA gene	Chr13:63412108-63439689 (+)
CBA/J	ENSMUSG00210009393	lncRNA gene	Chr13:63026804-63054464 (+)
DBA/2J	ENSMUSG00185009911	lncRNA gene	Chr13:66722438-66750096 (+)
FVB/NJ	ENSMUSG00205027482	lncRNA gene	Chr13:62446661-62474295 (+)
JF1/MsJ	ENSUMUG00000039040	lncRNA gene	Chr13:66397508-66425142 (+)
LP/J	ENSMUSG00230034726	lncRNA gene	Chr13:76897292-76924916 (+)
NOD/ShiLtJ	ENSMUSG00190041193	lncRNA gene	Chr13:63009111-63036779 (+)
NZO/HlLtJ	ENSMUSG00225047246	lncRNA gene	Chr13:69136676-69164218 (+)
PWK/PhJ	ENSLUMG00010011908	lncRNA gene	Chr13:62511809-62539654 (+)
SPRET/EiJ	ENSMSPG00010031012	lncRNA gene	Chr13:63372090-63400079 (+)
WSB/EiJ	ENSIUOG00005023800	lncRNA gene	Chr13:62146328-62173945 (+)

Homology

• Gene Tree
  Zfp85os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  1
• Gene trapped
  7
• Genomic Mutations
  1 involving Zfp85os
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000044081 (Evidence)
• NCBI Gene
  68271

Representative Sequences			Length	Strain/Species
genomic	68271	NCBI Gene Model | MGI Sequence Detail	27577	C57BL/6J
transcript	NR_027969	RefSeq | MGI Sequence Detail	2908	C57BL/6
polypeptide	Q9CR93	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 21

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Zfp85os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120257	Chr13:67876855-67876885 (+)	-511 bp
Tssr120258	Chr13:67877350-67877363 (+)	-24 bp
Tssr120259	Chr13:67892318-67892327 (+)	14,942 bp
Tssr120260	Chr13:67892339-67892344 (+)	14,961 bp