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Trmt12 Gene Detail
Summary
  • Symbol
    Trmt12
  • Name
    tRNA methyltranferase 12
  • Synonyms
    4632406N01Rik, Tyw2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915510
    NCBI Gene: 68260
  • Gene Overview
    MyGene.info: TRMT12
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:58872649-58876781 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 25.09 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915510
protein coding gene Chr15:58872649-58877127 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021877
protein coding gene Chr15:58079894-58084026 (+)
A/J MGP_AJ_G0021837
protein coding gene Chr15:55808139-55812271 (+)
AKR/J MGP_AKRJ_G0021818
protein coding gene Chr15:57344493-57348625 (+)
BALB/cJ MGP_BALBcJ_G0021844
protein coding gene Chr15:56026122-56030254 (+)
C3H/HeJ MGP_C3HHeJ_G0021618
protein coding gene Chr15:57480475-57484607 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022283
protein coding gene Chr15:60323254-60327386 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019820
protein coding gene Chr15:52897980-52902120 (+)
CAST/EiJ MGP_CASTEiJ_G0021135
protein coding gene Chr15:58131217-58135354 (+)
CBA/J MGP_CBAJ_G0021587
protein coding gene Chr15:62419569-62423701 (+)
DBA/2J MGP_DBA2J_G0021711
protein coding gene Chr15:55721526-55725658 (+)
FVB/NJ MGP_FVBNJ_G0021689
protein coding gene Chr15:54765305-54769437 (+)
LP/J MGP_LPJ_G0021781
protein coding gene Chr15:57935355-57939487 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021713
protein coding gene Chr15:67480933-67485065 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022306
protein coding gene Chr15:57753576-57757708 (+)
PWK/PhJ MGP_PWKPhJ_G0020880
protein coding gene Chr15:55726351-55730483 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020717
protein coding gene Chr15:57553459-57557588 (+)
WSB/EiJ MGP_WSBEiJ_G0021190
protein coding gene Chr15:57754067-57758199 (+)



Homology
more
  • Human Ortholog
    TRMT12, tRNA methyltransferase 12 homolog
  • Vertebrate Orthologs
    11
  • Human Ortholog
    TRMT12, tRNA methyltransferase 12 homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TRM12, TYW2
  • Links
    NCBI Gene ID: 55039
    neXtProt AC: NX_Q53H54
    UniProt: Q53H54

  • Chr Location
    8q24.13; chr8:124450807-124453026 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68260 NCBI Gene Model | MGI Sequence Detail 4133 C57BL/6J ±  kb
transcript NM_026642 RefSeq | MGI Sequence Detail 4133 Not Specified  
polypeptide Q8BG71 UniProt | EBI | MGI Sequence Detail 446 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 3
Other
Accession IDs
less
MGI:2146013
References
more
  • Summaries
    All 47
    Diseases 1
    Gene Ontology 4
    Phenotypes 25
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory