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Arl9 Gene Detail
Summary
  • Symbol
    Arl9
  • Name
    ADP-ribosylation factor-like 9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915496
    NCBI Gene: 384185
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr5:77004055-77010606 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 41.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915496
protein coding gene Chr5:77002744-77010959 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029652
protein coding gene Chr5:77220822-77227374 (+)
A/J MGP_AJ_G0029620
protein coding gene Chr5:74267177-74273718 (+)
AKR/J MGP_AKRJ_G0029568
protein coding gene Chr5:76690496-76697021 (+)
BALB/cJ MGP_BALBcJ_G0029629
protein coding gene Chr5:75003455-75009998 (+)
C3H/HeJ MGP_C3HHeJ_G0029352
protein coding gene Chr5:77064126-77070656 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030083
protein coding gene Chr5:80311746-80318288 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027324
protein coding gene Chr5:69897804-69903424 (+)
CAST/EiJ MGP_CASTEiJ_G0028760
protein coding gene Chr5:76272694-76279332 (+)
CBA/J MGP_CBAJ_G0029321
protein coding gene Chr5:82954548-82961080 (+)
DBA/2J MGP_DBA2J_G0029466
protein coding gene Chr5:74332001-74338531 (+)
FVB/NJ MGP_FVBNJ_G0029427
protein coding gene Chr5:73527920-73534386 (+)
LP/J MGP_LPJ_G0029553
protein coding gene Chr5:77657944-77664487 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029455
protein coding gene Chr5:86085058-86091681 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030116
protein coding gene Chr5:76242528-76249076 (+)
PWK/PhJ MGP_PWKPhJ_G0028483
protein coding gene Chr5:73344762-73351211 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028318
protein coding gene Chr5:75598674-75605266 (+)
WSB/EiJ MGP_WSBEiJ_G0028840
protein coding gene Chr5:76573087-76579617 (+)



Homology
more
  • Human Ortholog
    ARL9, ADP ribosylation factor like GTPase 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ARL9, ADP ribosylation factor like GTPase 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 132946
    neXtProt AC: NX_Q6T311
    UniProt: Q6T311

  • Chr Location
    4q12; chr4:56505209-56525174 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 66207
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ARL9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000063820 Ensembl Gene Model | MGI Sequence Detail 6552 C57BL/6J ±  kb
    transcript ENSMUST00000134197 Ensembl | MGI Sequence Detail 534 Not Applicable  
    polypeptide ENSMUSP00000122846 Ensembl | MGI Sequence Detail 171 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR027417 P-loop containing nucleoside triphosphate hydrolase
      IPR006689 Small GTPase superfamily, ARF/SAR type
      IPR005225 Small GTP-binding protein domain
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3

      Microarray probesets 1
    References
    more
    • Summaries
      All 22
      Phenotypes 9
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    03/31/2020
    MGI 6.15
    The Jackson Laboratory