Krt42
Gene Detail

Symbol Name ID

Krt42 keratin 42 MGI:1915489

Synonyms

2410039E07Rik, ecat6, K17n, Ka22

Feature Type

protein coding gene

Genetic Map

Chromosome 11

63.44 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr11:100262882-100269871 bp, - strand From VEGA annotation of GRCm38   6990 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:107091  Vertebrate Homology Class
1 mouse; 1 rat; 1 dog

Gene Tree: Krt42

Alleles and phenotypes

All alleles(22) : Targeted(4) Gene trapped(18)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	biological_process
Component	cytoplasm, intermediate filament
Function	structural molecule activity

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (12)    Tissues (12)   
Theiler Stages: 28

Assay Type	Results
Northern blot	12

cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(6) cDNA(5) Other(1)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000002542 (Evidence)
Ensembl Gene Model	ENSMUSG00000053654 (Evidence)
Entrez Gene	68239 (Evidence)
UniGene	158190
DFCI	TC1588689, TC1598750
DoTS	DT.101320971, DT.55283290
NIA Mouse Gene Index	U132185
Consensus CDS Project	CCDS25416.1
International Mouse Knockout Project Status	Krt42

Sequences

Length	Strain/Species
genomic	OTTMUSG00000002542	VEGA Gene Model | MGI Sequence Detail	6990	C57BL/6J
transcript	OTTMUST00000004968	VEGA | MGI Sequence Detail	1542	Not Applicable
polypeptide	OTTMUSP00000002393	VEGA | MGI Sequence Detail	452	Not Applicable

All sequences(27) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(68 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR016044	Filament
InterPro	IPR001664	Intermediate filament protein
InterPro	IPR018039	Intermediate filament protein, conserved site
InterPro	IPR002957	Keratin, type I
InterPro	IPR009053	Prefoldin
Protein Ontology	PR:000009628	keratin, type I cytoskeletal 42

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)