A930005H10Rik Gene Detail

Summary

• Symbol
  A930005H10Rik
• Name
  RIKEN cDNA A930005H10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915411
  NCBI Gene: 68161
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:115675227-115681779 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 50.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  299 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915411	lncRNA gene	Chr3:115675222-115681794 (-)
129S1/SvImJ	ENSMUSG00200026350	lncRNA gene	Chr3:112333549-112340228 (-)
A/J	ENSMUSG00195016537	lncRNA gene	Chr3:112581998-112588661 (-)
AKR/J	ENSMUSG00220032965	lncRNA gene	Chr3:110989311-110995972 (-)
BALB/cJ	ENSMUSG00180029682	lncRNA gene	Chr3:112526677-112533347 (-)
C3H/HeJ	ENSMUSG00175026736	lncRNA gene	Chr3:112067248-112073916 (-)
C57BL/6NJ	ENSMUSG00215007491	lncRNA gene	Chr3:112799924-112806617 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013648	unclassified non-coding RNA gene	Chr3:109604923-109612189 (-)
CAST/EiJ	ENSTCUG00005027554	lncRNA gene	Chr3:113075366-113082051 (-)
CBA/J	ENSMUSG00210002975	lncRNA gene	Chr3:112676027-112682686 (-)
DBA/2J	ENSMUSG00185008504	lncRNA gene	Chr3:113266082-113272742 (-)
FVB/NJ	ENSMUSG00205030521	lncRNA gene	Chr3:111614963-111621623 (-)
JF1/MsJ	ENSUMUG00000005291	lncRNA gene	Chr3:112169666-112176526 (-)
LP/J	ENSMUSG00230012811	lncRNA gene	Chr3:115194435-115201114 (-)
NOD/ShiLtJ	ENSMUSG00190033226	lncRNA gene	Chr3:113617582-113624289 (-)
NZO/HlLtJ	ENSMUSG00225004063	lncRNA gene	Chr3:117688443-117695103 (-)
PWK/PhJ	ENSLUMG00010025501	lncRNA gene	Chr3:112050372-112057552 (-)
SPRET/EiJ	ENSMSPG00010030772	lncRNA gene	Chr3:112672618-112679510 (-)
WSB/EiJ	ENSIUOG00005006985	lncRNA gene	Chr3:112824431-112831107 (-)

Homology

• Gene Tree
  A930005H10Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving A930005H10Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  17

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  3
• UniProt
  2

• Ensembl
  ENSMUSG00000054426 (Evidence)
• NCBI Gene
  68161

Representative Sequences			Length	Strain/Species
genomic	68161	NCBI Gene Model | MGI Sequence Detail	6553	C57BL/6J
transcript	NR_027895	RefSeq | MGI Sequence Detail	973	C57BL/6
polypeptide	Q8CEK0	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 18

  cDNA 18

  
  

  Microarray probesets 6

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for A930005H10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35289	Chr3:115681735-115681786 (-)	18 bp
Tssr35288	Chr3:115681704-115681731 (-)	61 bp
Tssr35287	Chr3:115681686-115681703 (-)	84 bp
Tssr35286	Chr3:115681650-115681661 (-)	123 bp
Tssr35285	Chr3:115681528-115681540 (-)	245 bp