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Brk1 Gene Detail
Summary
  • Symbol
    Brk1
  • Name
    BRICK1, SCAR/WAVE actin-nucleating complex subunit
  • Synonyms
    6720456B07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915406
    NCBI Gene: 101314
  • Gene Overview
    MyGene.info: BRK1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:113604772-113616951 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 52.81 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    77 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915406
protein coding gene Chr6:113604772-113616951 (.)
129S1/SvImJ MGP_129S1SvImJ_G0031132
protein coding gene Chr6:116141087-116153259 (+)
A/J MGP_AJ_G0031101
protein coding gene Chr6:111683475-111695652 (+)
AKR/J MGP_AKRJ_G0031032
protein coding gene Chr6:114684763-114696945 (+)
BALB/cJ MGP_BALBcJ_G0031112
protein coding gene Chr6:111628782-111640960 (+)
C3H/HeJ MGP_C3HHeJ_G0030596
protein coding gene Chr6:69603995-69616181 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031571
protein coding gene Chr6:119135699-119147878 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028735
protein coding gene Chr6:108708358-108719831 (+)
CAST/EiJ MGP_CASTEiJ_G0030219
protein coding gene Chr6:115138436-115149982 (+)
CBA/J MGP_CBAJ_G0030798
protein coding gene Chr6:123845868-123858051 (+)
DBA/2J MGP_DBA2J_G0030951
protein coding gene Chr6:110765583-110777728 (+)
FVB/NJ MGP_FVBNJ_G0030905
protein coding gene Chr6:109767275-109779455 (+)
LP/J MGP_LPJ_G0031031
protein coding gene Chr6:116169183-116181348 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030939
protein coding gene Chr6:128098182-128110375 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031598
protein coding gene Chr6:114699748-114711912 (+)
PWK/PhJ MGP_PWKPhJ_G0029935
protein coding gene Chr6:109718746-109731251 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029763
protein coding gene Chr6:113506710-113518907 (+)
WSB/EiJ MGP_WSBEiJ_G0030303
protein coding gene Chr6:115075544-115087711 (+)



Homology
more
  • Human Ortholog
    BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit
  • Vertebrate Orthologs
    10
  • Human Ortholog
    BRK1, BRICK1, SCAR/WAVE actin nucleating complex subunit
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C3orf10, hHBrk1, HSPC300, MDS027
  • Links
    NCBI Gene ID: 55845
    neXtProt AC: NX_Q8WUW1
    UniProt: Q8WUW1

  • Chr Location
    3p25.3; chr3:10115649-10127190 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10210
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;2 macaque, rhesus
  • HCOP
    human homology predictions: BRK1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene display partial embryonic lethality before implantation with abnormalities in the actin network and failure of cultured embryos to hatch from the zona pellucida.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 101314 NCBI Gene Model | MGI Sequence Detail 12180 C57BL/6J ±  kb
    transcript NM_133937 RefSeq | MGI Sequence Detail 1110 Not Specified  
    polypeptide Q91VR8 UniProt | EBI | MGI Sequence Detail 75 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 100
      cDNA 99
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2141632
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 1
      Gene Ontology 7
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory