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Rchy1 Gene Detail
Summary
  • Symbol
    Rchy1
  • Name
    ring finger and CHY zinc finger domain containing 1
  • Synonyms
    6720407C15Rik, Pirh2, PRO1996, Zfp363
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915348
    NCBI Gene: 68098
  • Gene Overview
    MyGene.info: RCHY1
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:91948904-91963068 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 45.58 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915348
 protein coding gene Chr5:91948842-91963223 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029739
 protein coding gene Chr5:93080744-93096204 (-)
A/J MGP_AJ_G0029705
 protein coding gene Chr5:89406737-89420884 (-)
AKR/J MGP_AKRJ_G0029651
 protein coding gene Chr5:92324715-92339212 (-)
BALB/cJ MGP_BALBcJ_G0029715
 protein coding gene Chr5:90290338-90304985 (-)
C3H/HeJ MGP_C3HHeJ_G0029438
 protein coding gene Chr5:92728842-92745213 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030169
 protein coding gene Chr5:96797435-96815239 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027405
 protein coding gene Chr5:85056555-85071671 (-)
CAST/EiJ MGP_CASTEiJ_G0028848
 protein coding gene Chr5:92103976-92118424 (-)
CBA/J MGP_CBAJ_G0029408
 protein coding gene Chr5:100127073-100145685 (-)
DBA/2J MGP_DBA2J_G0029552
 protein coding gene Chr5:89451631-89466325 (-)
FVB/NJ MGP_FVBNJ_G0029511
 protein coding gene Chr5:88303351-88317947 (-)
LP/J MGP_LPJ_G0029640
 protein coding gene Chr5:93465325-93480737 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029540
 protein coding gene Chr5:105077157-105092230 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030203
 protein coding gene Chr5:91857203-91874128 (-)
PWK/PhJ MGP_PWKPhJ_G0028567
 protein coding gene Chr5:88509775-88524479 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028402
 protein coding gene Chr5:91215565-91229714 (-)
WSB/EiJ MGP_WSBEiJ_G0028927
 protein coding gene Chr5:92313408-92328910 (-)



Homology
more
  • Human Ortholog
    RCHY1, ring finger and CHY zinc finger domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RCHY1, ring finger and CHY zinc finger domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ARNIP, CHIMP, PIRH2, PRO1996, RNF199, ZCHY, ZNF363
  • Links
    NCBI Gene ID: 25898
    neXtProt AC: NX_Q96PM5
    UniProt: Q96PM5

  • Chr Location
    4q21.1; chr4:75479037-75515057 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 22894
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RCHY1
  • Gene Tree
    Rchy1
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mouse embryonic fibroblasts from mice homozygous for a knock-out allele exhibit decreased cellular sensitivity to UV irradiation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    17
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    10
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029397 Ensembl Gene Model | MGI Sequence Detail 14165 C57BL/6J ±  kb
transcript ENSMUST00000031345 Ensembl | MGI Sequence Detail 1967 Not Applicable  
polypeptide ENSMUSP00000031345 Ensembl | MGI Sequence Detail 261 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
Other
Accession IDs
less
MGI:2141088
References
more
  • Summaries
    All 41
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 15
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:228256 Bohgaki M, et al., The E3 ligase PIRH2 polyubiquitylates CHK2 and regulates its turnover. Cell Death Differ. 2013 Jun;20(6):812-22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/06/2018
MGI 6.13 		The Jackson Laboratory