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Atpsckmt Gene Detail
Summary
  • Symbol
    Atpsckmt
  • Name
    ATP synthase C subunit lysine N-methyltransferase
  • Synonyms
    A930016P21Rik, Fam173b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915323
    NCBI Gene: 68073
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:31602069-31617537 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 13.02 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915323
protein coding gene Chr15:31601852-31621227 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021769
protein coding gene Chr15:29859966-29882749 (+)
A/J MGP_AJ_G0021730
protein coding gene Chr15:28656456-28675983 (+)
AKR/J MGP_AKRJ_G0021707
protein coding gene Chr15:29389221-29410583 (+)
BALB/cJ MGP_BALBcJ_G0021736
protein coding gene Chr15:28663293-28683034 (+)
C3H/HeJ MGP_C3HHeJ_G0021511
protein coding gene Chr15:29410120-29429842 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022175
protein coding gene Chr15:31053194-31079887 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019713
protein coding gene Chr15:26749528-26768121 (+)
CAST/EiJ MGP_CASTEiJ_G0021027
protein coding gene Chr15:29903513-29926932 (+)
CBA/J MGP_CBAJ_G0021480
protein coding gene Chr15:31930791-31953377 (+)
DBA/2J MGP_DBA2J_G0021604
protein coding gene Chr15:28463529-28483130 (+)
FVB/NJ MGP_FVBNJ_G0021582
protein coding gene Chr15:27986300-28005573 (+)
LP/J MGP_LPJ_G0021673
protein coding gene Chr15:29731119-29752645 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021607
protein coding gene Chr15:34908759-34929191 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022198
protein coding gene Chr15:29642892-29662990 (+)
PWK/PhJ MGP_PWKPhJ_G0020771
protein coding gene Chr15:28626127-28645491 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020609
protein coding gene Chr15:29430689-29452090 (+)
WSB/EiJ MGP_WSBEiJ_G0021083
protein coding gene Chr15:29592733-29611889 (+)



Homology
more
  • Human Ortholog
    ATPSCKMT, ATP synthase c subunit lysine N-methyltransferase
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ATPSCKMT, ATP synthase c subunit lysine N-methyltransferase
    Orthology source: HomoloGene, HGNC
  • Synonyms
    FAM173B, hFAM173B, JS-2
  • Links
    NCBI Gene ID: 134145
    neXtProt AC: NX_Q6P4H8
    UniProt: Q6P4H8

  • Chr Location
    5p15.2; chr5:10225507-10249909 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68073 NCBI Gene Model | MGI Sequence Detail 15469 C57BL/6J ±  kb
transcript NM_001356313 RefSeq | MGI Sequence Detail 1292 C57BL/6  
polypeptide Q9D1Z3 UniProt | EBI | MGI Sequence Detail 247 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    cDNA 29

    Microarray probesets 4
Other
Accession IDs
less
MGI:2145938
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:270133 Willemen HLDM, et al., Identification of FAM173B as a protein methyltransferase promoting chronic pain. PLoS Biol. 2018 Feb;16(2):e2003452

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory