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Chd1l
Gene Detail
 Symbol
Name
ID
Chd1l
chromodomain helicase DNA binding protein 1-like
MGI:1915308
Synonyms 4432404A22Rik, Snf2p
Feature Type protein coding gene
Genetic Map
Chromosome 3
42.17 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:97560748-97610190 bp, - strand
From NCBI annotation of GRCm38

  49443 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11590  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Chd1l

Human
homologs
Human Homolog CHD1L, chromodomain helicase DNA binding protein 1-like
NCBI Gene ID 9557
neXtProt AC  NX_Q86WJ1
Human Synonyms  ALC1, CHDL
Human Chr (Location)  1q12; chr1:147172804-147295766 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(8)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chd1l interacts with 72 markers (Mir7-1, Mir15a, Mir27a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process ATP catabolic process, cellular response to DNA damage stimulus, ...
Component cytoplasm, nucleus, ...
Function ATPase activity, ATP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(47)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(47)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000028089 (Evidence)
Entrez Gene68058 (Evidence)
UniGene41447
DFCITC1579094, TC1597420, TC1735283
DoTSDT.101158340, DT.101314885, DT.531894
NIA Mouse Gene IndexU024407
EC3.6.4.12
Consensus CDS ProjectCCDS38561.1
International Mouse Knockout Project StatusChd1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 68058 NCBI Gene Model | MGI Sequence Detail 49443 C57BL/6J ±  kb
transcript NM_026539 RefSeq | MGI Sequence Detail 2989 C57BL/6 
polypeptide Q9CXF7 UniProt | EBI | MGI Sequence Detail 900 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(10) UniProt(3)
Polymorphisms SNPs within 2kb(371 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002589 Appr-1-p processing
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR000330 SNF2-related
Protein Ontology PR:000005407 chromodomain-helicase-DNA-binding protein 1-like
Graphical View of Protein Domain Structure
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:192874 Snider AC, et al., The chromatin remodeling factor Chd1l is required in the preimplantation embryo. Biol Open. 2013;2:121-131
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory