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Chd1l
Gene Detail
Symbol

Name
ID
Chd1l
chromodomain helicase DNA binding protein 1-like
MGI:1915308
Synonyms
4432404A22Rik, Snf2p
Feature Type
protein coding gene
Genetic Map
Chromosome 3
42.17 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:97560742-97610203 bp, - strand
From Ensembl annotation of GRCm38

  49462 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11590  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Chd1l

Human
homologs
Human Homolog CHD1L, chromodomain helicase DNA binding protein 1-like
NCBI Gene ID 9557
neXtProt AC  NX_Q86WJ1
Human Synonyms  ALC1, CHDL
Human Chr (Location)  1q12; chr1:147172804-147295766 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(8)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chd1l interacts with 72 markers (Mir7-1, Mir15a, Mir27a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process ATP catabolic process, cellular response to DNA damage stimulus, ...
Component cytoplasm, nucleoplasm, ...
Function ATPase activity, ATP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(47)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(47)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000028089 (Evidence)
Entrez Gene68058 (Evidence)
UniGene41447
DFCITC1579094, TC1735283, TC1597420
DoTSDT.531894, DT.101158340, DT.101314885
NIA Mouse Gene IndexU024407
EC3.6.4.12
Consensus CDS ProjectCCDS38561.1
International Mouse Knockout Project StatusChd1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028089 Ensembl Gene Model | MGI Sequence Detail 49462 C57BL/6J ±  kb
transcript ENSMUST00000029730 Ensembl | MGI Sequence Detail 3008 Not Applicable 
polypeptide ENSMUSP00000029730 Ensembl | MGI Sequence Detail 900 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(10) UniProt(5)
Polymorphisms
SNPs within 2kb(371 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002589 Appr-1-p processing
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR000330 SNF2-related
Protein Ontology PR:000005407 chromodomain-helicase-DNA-binding protein 1-like
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:192874 Snider AC, et al., The chromatin remodeling factor Chd1l is required in the preimplantation embryo. Biol Open. 2013;2:121-131
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory