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Chd1l
Gene Detail
Symbol

Name
ID
Chd1l
chromodomain helicase DNA binding protein 1-like
MGI:1915308
Synonyms
4432404A22Rik, Snf2p
Feature Type
protein coding gene
Genetic Map
Chromosome 3
42.17 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:97560748-97610190 bp, - strand
From NCBI annotation of GRCm38

  49443 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11590  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: CHD1L
Gene Tree: Chd1l

Human
homologs
CHD1L, chromodomain helicase DNA binding protein 1-like
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9557
neXtProt AC: NX_Q86WJ1

Human Synonyms: ALC1, CHDL

Human Chr (Location): 1q12; chr1:147242641-147295766 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(8)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Chd1l interacts with 72 markers (Mir7-1, Mir15a, Mir27a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cellular response to DNA damage stimulus, chromatin remodeling, ...
Component cytoplasm, nucleoplasm, ...
Function ATPase activity, ATP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(47)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(47)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000028089 (Evidence)
Entrez Gene 68058 (Evidence)
UniGene 41447
DFCI TC1579094, TC1735283, TC1597420
DoTS DT.531894, DT.101158340, DT.101314885
NIA Mouse Gene Index U024407
EC 3.6.4.12
Consensus CDS Project CCDS38561.1
International Mouse Phenotyping Consortium Status Chd1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 68058 NCBI Gene Model | MGI Sequence Detail 49443 C57BL/6J ±  kb
transcript NM_026539 RefSeq | MGI Sequence Detail 2989 C57BL/6 
polypeptide Q9CXF7 UniProt | EBI | MGI Sequence Detail 900 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(371 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002589 Appr-1-p processing
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR000330 SNF2-related
Protein Ontology PR:000005407 chromodomain-helicase-DNA-binding protein 1-like
Graphical View of Protein Domain Structure
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:192874 Snider AC, et al., The chromatin remodeling factor Chd1l is required in the preimplantation embryo. Biol Open. 2013;2:121-131
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory