About   Help   FAQ
Rps13
Gene Detail
 Symbol
Name
ID
Rps13
ribosomal protein S13
MGI:1915302
Synonyms 2700063M04Rik
Feature Type protein coding gene
Genetic Map
Chromosome 7
61.61 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:116331507-116334190 bp, - strand
From NCBI annotation of GRCm38

  2684 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128182  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: ribosomal protein S13
Gene Tree: Rps13

Human
homologs
Human Homolog RPS13, ribosomal protein S13
NCBI Gene ID 6207
neXtProt AC  NX_P62277
Human Synonyms  S13
Human Chr (Location)  11p15; chr11:17074392-17077673 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(8)
Interactions
Rps13 interacts with 11 markers (Mir17, Mir20b, Mir93, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process negative regulation of RNA splicing, translation
Component cytosolic small ribosomal subunit, extracellular vesicular exosome, ...
Function mRNA binding, poly(A) RNA binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(9)
Microarray probesets(7)
Other database
links
Ensembl Gene ModelENSMUSG00000090862 (Evidence)
Entrez Gene68052 (Evidence)
DFCITC1573791, TC1587817, TC1626513, TC1723263
DoTSDT.101147366, DT.101200090, DT.101226589, DT.101331993, DT.101369359, DT.101375701, DT.497255, DT.97335861
Consensus CDS ProjectCCDS52370.1
International Mouse Knockout Project StatusRps13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 68052 NCBI Gene Model | MGI Sequence Detail 2684 C57BL/6J ±  kb
transcript NM_026533 RefSeq | MGI Sequence Detail 585 C57BL/6 
polypeptide P62301 UniProt | EBI | MGI Sequence Detail 151 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(85 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012606 Ribosomal protein S13/S15, N-terminal
InterPro IPR000589 Ribosomal protein S15
InterPro IPR023029 Ribosomal protein S15P
InterPro IPR009068 S15/NS1, RNA-binding
Protein Ontology PR:000014254 40S ribosomal protein S13
Graphical View of Protein Domain Structure
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:198500 Nakahara M, et al., Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from MSM/Ms mice. Mamm Genome. 2013 Jun;24(5-6):228-39
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/16/2014
MGI 5.19
The Jackson Laboratory